Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 2.0e-152 542.3 260 100.0
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 4.3e-83 312.0 157 94.9
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 5.5e-78 295.0 157 91.1
Zm00001eb340920 Zea mays HOM05D000103 ORTHO05D000049 3.8e-71 272.3 134 98.5
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 2.3e-44 183.3 103 89.3
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.8e-42 176.4 81 97.5
Zm00001eb288530 Zea mays HOM05D001134 ORTHO05D000070 2.4e-41 173.3 88 93.2
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 2.7e-37 159.8 81 84.0
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 3.6e-37 159.5 81 84.0
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 3.6e-37 159.5 81 85.2
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.6e-37 159.5 81 84.0
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 4.7e-37 159.1 81 82.7
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 8.0e-37 158.3 81 82.7
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 1.4e-36 157.5 81 82.7
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.4e-36 157.5 81 82.7
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.4e-36 157.5 80 85.0
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.4e-36 157.5 81 85.2
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 1.8e-36 157.1 81 82.7
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 1.8e-36 157.1 81 84.0
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.8e-36 157.1 81 84.0
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.8e-36 157.1 81 82.7
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.0e-36 156.4 83 79.5
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 3.0e-36 156.4 81 82.7
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 4.0e-36 156.0 81 81.5
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 4.0e-36 156.0 81 81.5
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 4.0e-36 156.0 81 81.5
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 4.0e-36 156.0 81 81.5
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 4.0e-36 156.0 81 81.5
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 4.0e-36 156.0 81 81.5
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 4.0e-36 156.0 81 81.5
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 5.2e-36 155.6 81 81.5
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 5.2e-36 155.6 81 81.5
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 5.2e-36 155.6 81 81.5
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 5.2e-36 155.6 81 81.5
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 6.8e-36 155.2 81 81.5
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 6.8e-36 155.2 81 81.5
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 6.8e-36 155.2 81 80.2
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 6.8e-36 155.2 83 78.3
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 6.8e-36 155.2 81 84.0
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 6.8e-36 155.2 81 81.5
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 6.8e-36 155.2 81 81.5
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 8.8e-36 154.8 81 81.5
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 8.8e-36 154.8 81 81.5
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 8.8e-36 154.8 81 81.5
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 8.8e-36 154.8 81 80.2
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 8.8e-36 154.8 81 81.5
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 1.2e-35 154.5 81 79.0
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.2e-35 154.5 81 80.2
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 1.2e-35 154.5 81 82.7
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 1.2e-35 154.5 83 79.5
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 1.2e-35 154.5 81 80.2
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.2e-35 154.5 81 80.2
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.2e-35 154.5 81 80.2
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.2e-35 154.5 80 80.0
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.2e-35 154.5 81 80.2
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.2e-35 154.5 81 80.2
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.2e-35 154.5 81 80.2
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 1.5e-35 154.1 81 81.5
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.5e-35 154.1 81 79.0
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 1.5e-35 154.1 81 80.2
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.5e-35 154.1 81 80.2
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.5e-35 154.1 80 81.2
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.5e-35 154.1 82 79.3
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 2.6e-35 153.3 83 78.3
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 2.6e-35 153.3 81 80.2
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 3.4e-35 152.9 81 80.2
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 5.7e-35 152.1 81 79.0
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 5.7e-35 152.1 81 80.2
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 5.7e-35 152.1 81 77.8
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 7.5e-35 151.8 81 82.7
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 9.8e-35 151.4 81 79.0
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 9.8e-35 151.4 81 80.2
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.3e-34 151.0 81 80.2
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.3e-34 151.0 81 80.2
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 1.3e-34 151.0 81 80.2
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 1.3e-34 151.0 81 80.2
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.7e-34 150.6 81 79.0
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 2.8e-34 149.8 81 79.0
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 2.8e-34 149.8 81 77.8
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 3.7e-34 149.4 81 79.0
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 3.7e-34 149.4 81 79.0
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 3.7e-34 149.4 81 79.0
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 3.7e-34 149.4 81 79.0
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 3.7e-34 149.4 81 79.0
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 3.7e-34 149.4 81 79.0
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.7e-34 149.4 81 81.5
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 4.8e-34 149.1 81 79.0
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 6.3e-34 148.7 81 79.0
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 6.3e-34 148.7 81 76.5
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 6.3e-34 148.7 81 76.5
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 6.3e-34 148.7 81 79.0
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 6.3e-34 148.7 81 77.8
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 8.3e-34 148.3 79 79.7
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 8.3e-34 148.3 81 79.0
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 8.3e-34 148.3 81 82.7
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.1e-33 147.9 81 79.0
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.1e-33 147.9 80 77.5
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 1.4e-33 147.5 81 77.8
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 1.4e-33 147.5 81 77.8
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 1.4e-33 147.5 81 77.8
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 1.4e-33 147.5 81 77.8
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 1.4e-33 147.5 81 77.8
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 1.4e-33 147.5 81 77.8
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.4e-33 147.5 81 76.5
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.8e-33 147.1 81 77.8
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.8e-33 147.1 81 77.8
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 1.8e-33 147.1 81 79.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.8e-33 147.1 81 77.8
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.8e-33 147.1 81 77.8
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.8e-33 147.1 81 77.8
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 2.4e-33 146.7 83 75.9
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 2.4e-33 146.7 81 76.5
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 3.1e-33 146.4 81 77.8
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 5.4e-33 145.6 80 77.5
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 5.4e-33 145.6 81 75.3
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 7.0e-33 145.2 81 75.3
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 7.0e-33 145.2 81 76.5
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.6e-32 144.1 81 76.5
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 2.0e-32 143.7 81 75.3
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 4.5e-32 142.5 80 75.0
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.3e-31 141.0 81 76.5
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.3e-31 140.2 83 72.3
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 2.3e-31 140.2 73 82.2
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 4.2e-30 136.0 73 78.1
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 2.8e-29 133.3 81 71.6
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 6.1e-29 132.1 70 78.6
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 1.0e-28 131.3 81 69.1
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.4e-28 131.0 81 67.9
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.4e-28 131.0 81 67.9
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 8.9e-28 128.3 81 63.0
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 2.6e-27 126.7 81 69.1
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 5.7e-27 125.6 81 64.2
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 5.7e-27 125.6 73 72.6
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 7.5e-27 125.2 81 64.2
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 7.5e-27 125.2 81 64.2
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 7.5e-27 125.2 81 63.0
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 9.8e-27 124.8 80 63.8
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 6.3e-26 122.1 81 61.7
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.3e-26 122.1 80 63.8
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 1.4e-25 120.9 81 63.0
Zm00001eb270690 Zea mays HOM05D004365 ORTHO05D441768 1.8e-25 120.6 58 96.6
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 5.4e-25 119.0 80 63.8
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 4.5e-24 115.9 64 79.7
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.5e-22 110.2 81 58.0
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.5e-22 110.2 81 51.9
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.6e-22 109.0 80 62.5
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 5.2e-20 102.4 54 81.5
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 5.2e-20 102.4 71 66.2
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.2e-19 101.3 54 83.3
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.6e-19 100.1 54 77.8
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 4.4e-19 99.4 54 79.6
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.3e-18 97.8 54 81.5
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 3.9e-15 86.3 75 49.3
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 8.6e-15 85.1 54 66.7
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.1e-14 84.7 76 47.4
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 1.9e-14 84.0 48 75.0
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.4e-09 67.8 60 56.7
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 4.1e-09 66.2 70 40.0
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.2e-08 64.7 119 33.6
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 2.1e-08 63.9 135 33.3
Os01g0773600 Oryza sativa ssp. japonica HOM05D000979 ORTHO05D003182 2.7e-08 63.5 131 38.9
Zm00001eb370020 Zea mays HOM05D000979 ORTHO05D003182 6.0e-08 62.4 66 56.1
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 2.3e-07 60.5 70 40.0
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 4.3e-06 56.2 40 70.0
HanXRQChr15g0468671 Helianthus annuus HOM05D000979 ORTHO05D003182 5.6e-06 55.8 66 50.0
Lsat_1_v5_gn_5_67540 Lactuca sativa HOM05D000979 ORTHO05D003182 5.6e-06 55.8 66 50.0
CDE04G1261 Ceratophyllum demersum HOM05D000979 ORTHO05D003182 7.3e-06 55.5 66 50.0
Nitab4.5_0012986g0010 Nicotiana tabacum HOM05D000979 ORTHO05D003182 7.3e-06 55.5 80 42.5
Actinidia04491 Actinidia chinensis HOM05D000979 ORTHO05D003182 9.5e-06 55.1 66 50.0
MSTRG.4090 Avicennia marina HOM05D000979 ORTHO05D003182 9.5e-06 55.1 66 48.5
Migut.G00418 Erythranthe guttata HOM05D000979 ORTHO05D003182 9.5e-06 55.1 66 48.5
Sopen06g018990 Solanum pennellii HOM05D000979 ORTHO05D003182 9.5e-06 55.1 66 48.5
TAR362G1217 Trochodendron aralioides HOM05D000979 ORTHO05D003182 9.5e-06 55.1 30 83.3


User provided reference genes

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