Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 4.4e-53 211.1 109 100.0
Zm00001eb134450 Zea mays HOM05D001670 ORTHO05D010670 4.4e-53 211.1 109 100.0
Zm00001eb177620 Zea mays HOM05D001670 ORTHO05D002980 1.2e-50 203.0 109 97.2
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 4.7e-47 191.0 109 90.8
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 4.1e-43 177.9 109 80.7
Os03g0102333 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.6e-34 149.4 109 73.4
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 2.9e-33 145.2 109 70.6
Zm00001eb235140 Zea mays HOM05D001670 ORTHO05D002980 6.5e-33 144.1 74 98.6
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 8.5e-33 143.7 109 68.8
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 5.5e-32 141.0 108 67.6
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 9.4e-32 140.2 109 68.8
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 1.6e-31 139.4 107 70.1
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 2.1e-31 139.0 109 67.0
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.7e-31 138.7 109 67.9
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 2.7e-31 138.7 109 66.1
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 4.7e-31 137.9 109 63.3
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 6.1e-31 137.5 109 67.9
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 6.1e-31 137.5 109 67.9
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 6.1e-31 137.5 108 67.6
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 8.0e-31 137.1 109 65.1
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.0e-30 136.7 109 67.0
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.8e-30 136.0 109 67.0
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.8e-30 136.0 109 67.0
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 1.8e-30 136.0 109 65.1
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 1.8e-30 136.0 109 64.2
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.8e-30 136.0 109 65.1
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.3e-30 135.6 109 66.1
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 2.3e-30 135.6 109 66.1
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 2.3e-30 135.6 109 61.5
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 2.3e-30 135.6 109 65.1
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 3.0e-30 135.2 109 65.1
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 3.0e-30 135.2 108 62.0
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 3.0e-30 135.2 109 63.3
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 5.2e-30 134.4 107 68.2
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 5.2e-30 134.4 109 65.1
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 5.2e-30 134.4 109 65.1
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 6.8e-30 134.0 109 62.4
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 6.8e-30 134.0 109 62.4
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 1.2e-29 133.3 110 65.5
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 1.2e-29 133.3 109 62.4
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 1.2e-29 133.3 109 62.4
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.2e-29 133.3 109 64.2
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.5e-29 132.9 108 66.7
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.5e-29 132.9 109 64.2
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 1.5e-29 132.9 109 64.2
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 2.6e-29 132.1 109 63.3
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 5.7e-29 131.0 109 59.6
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 5.7e-29 131.0 109 64.2
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 7.5e-29 130.6 109 64.2
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 1.3e-28 129.8 109 59.6
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 1.3e-28 129.8 108 63.0
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 1.7e-28 129.4 109 62.4
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 1.7e-28 129.4 106 64.2
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.8e-28 128.6 109 62.4
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 2.8e-28 128.6 109 62.4
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 2.8e-28 128.6 109 67.9
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 2.8e-28 128.6 106 63.2
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 3.7e-28 128.3 109 63.3
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 4.8e-28 127.9 109 61.5
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 4.8e-28 127.9 109 62.4
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 6.3e-28 127.5 109 59.6
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 6.3e-28 127.5 107 61.7
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 6.3e-28 127.5 109 62.4
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 1.1e-27 126.7 121 58.7
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.1e-27 126.7 109 61.5
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 1.4e-27 126.3 109 61.5
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 1.8e-27 125.9 110 64.5
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 2.4e-27 125.6 108 61.1
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 2.4e-27 125.6 109 60.6
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 2.4e-27 125.6 109 62.4
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 2.4e-27 125.6 107 61.7
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 3.1e-27 125.2 109 59.6
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 3.1e-27 125.2 109 59.6
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 4.1e-27 124.8 108 61.1
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 5.4e-27 124.4 109 63.3
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 5.4e-27 124.4 107 65.4
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 7.0e-27 124.0 109 59.6
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 7.0e-27 124.0 106 67.9
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 9.1e-27 123.6 110 60.9
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.2e-26 123.2 107 63.6
Hma1.2p1_0341F.1_g130250 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 1.2e-26 123.2 108 61.1
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 1.2e-26 123.2 109 62.4
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 1.6e-26 122.9 109 61.5
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.6e-26 122.9 111 64.9
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 1.6e-26 122.9 111 64.9
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 2.7e-26 122.1 110 62.7
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 2.7e-26 122.1 108 59.3
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 2.7e-26 122.1 107 63.6
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.7e-26 122.1 107 63.6
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.7e-26 122.1 107 63.6
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.7e-26 122.1 107 63.6
Zm00001eb133400 Zea mays HOM05D013194 ORTHO05D015061 2.7e-26 122.1 85 77.6
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.9e-26 120.9 107 62.6
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.9e-26 120.9 107 62.6
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 5.9e-26 120.9 109 59.6
Actinidia20646 Actinidia chinensis HOM05D001670 ORTHO05D010670 7.7e-26 120.6 109 64.2
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 7.7e-26 120.6 109 58.7
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 1.0e-25 120.2 109 56.9
CSS0045045 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 2.3e-25 119.0 106 63.2
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 2.3e-25 119.0 96 66.7
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 1.1e-24 116.7 112 60.7
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 4.2e-24 114.8 105 57.1
Actinidia00124 Actinidia chinensis HOM05D001670 ORTHO05D010670 9.5e-24 113.6 97 62.9
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 9.5e-24 113.6 112 55.4
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 1.2e-23 113.2 109 58.7
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 1.6e-23 112.8 94 66.0
Thecc.03G154200 Theobroma cacao HOM05D001670 ORTHO05D002980 6.1e-23 110.9 96 65.6
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 1.0e-22 110.2 112 55.4
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 1.0e-22 110.2 112 55.4
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 1.0e-22 110.2 113 55.8
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 1.0e-22 110.2 111 55.9
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 1.0e-22 110.2 112 55.4
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 1.0e-22 110.2 112 55.4
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 1.0e-22 110.2 113 55.8
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 1.0e-22 110.2 112 55.4
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 1.0e-22 110.2 111 55.9
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 1.4e-22 109.8 111 55.9
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.8e-22 109.4 110 57.3
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 1.8e-22 109.4 84 69.0
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 2.3e-22 109.0 72 77.8
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 2.3e-22 109.0 112 54.5
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 3.0e-22 108.6 112 55.4
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 3.0e-22 108.6 112 58.0
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 4.0e-22 108.2 110 53.6
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 4.0e-22 108.2 111 55.0
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 4.0e-22 108.2 111 55.0
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 4.0e-22 108.2 111 55.0
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.0e-22 108.2 105 58.1
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 5.2e-22 107.8 80 67.5
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 6.8e-22 107.5 112 56.2
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 8.9e-22 107.1 72 75.0
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.2e-21 106.7 112 52.7
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 1.5e-21 106.3 109 55.0
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.5e-21 106.3 106 62.3
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 2.0e-21 105.9 111 55.0
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 2.0e-21 105.9 72 73.6
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 2.0e-21 105.9 111 55.0
Glyma.03G118200 Glycine max HOM05D001670 ORTHO05D002980 2.0e-21 105.9 109 54.1
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 3.4e-21 105.1 110 53.6
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 7.5e-21 104.0 110 54.5
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 2.2e-20 102.4 72 73.6
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 2.8e-20 102.1 90 62.2
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 4.9e-20 101.3 87 63.2
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.1e-19 100.1 96 59.4
CARHR248060 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.4e-19 99.8 110 53.6
BcaC04g24208 Brassica carinata HOM05D001670 ORTHO05D002980 5.4e-19 97.8 106 50.0
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 1.2e-18 96.7 76 67.1
C09p00060 Brassica napus HOM05D001670 ORTHO05D002980 1.6e-18 96.3 88 58.0
BraA09t35680Z Brassica rapa HOM05D001670 ORTHO05D002980 1.6e-18 96.3 88 58.0
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 7.8e-18 94.0 86 57.0
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 7.8e-18 94.0 100 55.0
ECA234G2815 Erigeron canadensis HOM05D001670 ORTHO05D002980 2.1e-15 85.9 60 71.7
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 6.1e-15 84.3 106 47.2
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 1.0e-14 83.6 105 47.6
HanXRQChr16g0519701 Helianthus annuus HOM05D001670 ORTHO05D002980 2.6e-13 79.0 78 51.3
Actinidia20643 Actinidia chinensis HOM05D001670 ORTHO05D010670 3.7e-12 75.1 47 80.9
AagrBONN_evm.TU.Sc2ySwM_362.1757 Anthoceros agrestis HOM05D001670 ORTHO05D002980 9.2e-11 70.5 107 41.1
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 2.7e-10 68.9 35 100.0
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 2.7e-10 68.9 35 100.0
Actinidia00131 Actinidia chinensis HOM05D001670 ORTHO05D010670 1.7e-09 66.2 78 47.4
Zm00001eb093240 Zea mays HOM05D013194 ORTHO05D015061 5.0e-09 64.7 46 73.9
Zm00001eb202170 Zea mays HOM05D004181 ORTHO05D005610 5.0e-09 64.7 46 73.9
Zm00001eb216850 Zea mays HOM05D013194 ORTHO05D015061 5.0e-09 64.7 46 73.9
Zm00001eb237010 Zea mays HOM05D001670 ORTHO05D005610 4.3e-08 61.6 30 100.0
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 9.5e-08 60.5 75 48.0
Lsat_1_v5_gn_2_21940 Lactuca sativa HOM05D001670 ORTHO05D010670 2.8e-07 58.9 42 61.9
Lsat_1_v5_gn_2_65881 Lactuca sativa HOM05D001670 ORTHO05D010670 4.7e-07 58.2 36 72.2
Lsat_1_v5_gn_7_6821 Lactuca sativa HOM05D001670 ORTHO05D010670 4.7e-07 58.2 36 72.2
Zm00001eb106330 Zea mays HOM05D001670 ORTHO05D002980 5.2e-06 54.7 26 100.0
Zm00001eb118550 Zea mays HOM05D001670 ORTHO05D002980 5.2e-06 54.7 26 100.0
Zm00001eb131810 Zea mays HOM05D001670 ORTHO05D002980 5.2e-06 54.7 26 100.0
Zm00001eb283330 Zea mays HOM05D001670 ORTHO05D002980 5.2e-06 54.7 26 100.0
Zm00001eb387210 Zea mays HOM05D001670 ORTHO05D444317 5.2e-06 54.7 26 100.0
Zm00001eb092490 Zea mays HOM05D001670 ORTHO05D016423 8.9e-06 53.9 27 100.0


User provided reference genes

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