Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 0.0e+00 1355.1 707 100.0
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 0.0e+00 1145.6 702 85.8
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.5e-279 966.1 692 73.6
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 7.4e-279 963.8 727 71.5
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.9e-275 951.8 723 70.7
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 1.6e-273 946.0 730 70.5
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 8.8e-272 940.3 731 70.0
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 1.1e-269 933.3 736 69.0
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 2.0e-268 929.1 722 69.3
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 5.9e-268 927.5 726 69.0
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 1.1e-266 923.3 725 68.3
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 4.7e-265 917.9 774 64.9
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 2.3e-264 915.6 724 69.9
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 3.4e-263 911.8 736 67.7
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 5.7e-263 911.0 729 69.0
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 5.7e-263 911.0 725 67.3
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 2.2e-262 909.1 721 67.7
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 2.8e-262 908.7 682 70.7
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 6.3e-262 907.5 723 68.0
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 6.3e-262 907.5 718 68.7
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 1.4e-261 906.4 738 65.9
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 1.8e-261 906.0 726 67.9
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 2.0e-260 902.5 722 67.6
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 7.7e-260 900.6 687 69.4
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 1.7e-259 899.4 729 65.7
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 2.3e-259 899.0 752 65.8
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 5.0e-259 897.9 716 67.6
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 1.9e-258 896.0 719 66.8
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 4.2e-258 894.8 705 67.8
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 4.2e-258 894.8 681 68.1
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 9.5e-258 893.6 725 66.2
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 1.6e-257 892.9 714 68.1
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 2.8e-257 892.1 726 66.4
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 3.6e-257 891.7 731 68.0
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 4.7e-257 891.3 731 65.5
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 6.1e-257 891.0 714 66.4
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 6.1e-257 891.0 730 67.1
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 8.0e-257 890.6 703 67.7
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.0e-256 890.2 721 66.0
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.2e-255 886.7 724 67.4
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 1.7e-254 882.9 717 66.4
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.1e-253 880.2 721 66.6
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 3.1e-253 878.6 716 65.4
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 5.4e-253 877.9 728 65.5
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.3e-251 873.2 698 66.3
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.3e-251 873.2 675 70.4
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 3.8e-251 871.7 721 65.6
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 3.8e-251 871.7 725 65.2
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 5.0e-251 871.3 571 75.3
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 1.1e-250 870.2 621 70.5
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.1e-250 870.2 682 68.2
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 9.5e-250 867.1 631 71.2
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 1.6e-249 866.3 764 62.7
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 3.6e-249 865.1 722 66.5
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 4.7e-249 864.8 597 73.0
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 1.8e-248 862.8 730 65.6
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 2.3e-248 862.4 727 65.1
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 2.3e-248 862.4 641 70.5
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 5.2e-248 861.3 644 70.0
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 8.9e-248 860.5 713 65.8
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 2.6e-247 859.0 713 65.1
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 7.5e-247 857.4 716 65.4
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 9.8e-247 857.1 679 68.9
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.2e-246 855.9 503 80.9
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 6.4e-246 854.4 742 63.9
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 1.1e-245 853.6 635 69.3
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.1e-245 853.6 715 64.9
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 1.4e-245 853.2 638 69.1
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 2.0e-244 849.4 714 64.4
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 2.7e-244 849.0 745 62.8
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 4.6e-244 848.2 502 81.3
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 5.9e-244 847.8 640 69.1
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 7.8e-244 847.4 644 68.9
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 1.7e-243 846.3 670 67.8
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 2.3e-243 845.9 690 67.2
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 3.9e-243 845.1 667 66.6
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 2.5e-242 842.4 716 64.5
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 3.3e-242 842.0 709 67.0
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 1.1e-240 837.0 693 67.0
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 3.1e-240 835.5 648 67.4
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 4.0e-240 835.1 646 67.5
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 5.2e-240 834.7 773 61.1
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 2.6e-239 832.4 652 67.8
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 7.5e-239 830.9 661 67.9
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 1.1e-237 827.0 645 69.0
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 9.5e-234 813.9 712 62.6
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 1.8e-232 809.7 476 81.3
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 3.1e-232 808.9 625 69.3
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.7e-228 795.8 732 62.2
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 2.7e-228 795.8 735 64.4
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 4.3e-226 788.5 573 66.7
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 9.9e-223 777.3 726 61.0
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 3.2e-221 772.3 525 71.6
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 7.3e-218 761.1 715 60.8
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 3.1e-216 755.7 764 56.0
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 5.2e-216 755.0 740 55.5
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 1.7e-211 740.0 726 57.2
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.4e-205 719.5 529 69.8
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 3.5e-204 715.7 499 68.7
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 9.9e-199 697.6 726 56.1
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.3e-192 675.2 400 80.8
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.6e-185 653.7 541 61.0
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 8.2e-185 651.4 483 64.2
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 2.6e-183 646.4 533 61.0
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 4.2e-173 612.5 334 84.7
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.0e-158 562.4 364 73.6
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.5e-157 560.8 693 51.5
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.9e-149 533.9 555 58.9
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 5.4e-136 489.2 504 50.0
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 5.2e-131 472.6 494 57.3
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.4e-128 464.5 558 46.1
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 4.3e-125 453.0 498 52.6
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.1e-115 421.8 255 76.1
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 8.3e-113 412.1 715 38.6
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 2.3e-102 377.5 513 40.0
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.2e-95 355.1 214 78.5
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 3.5e-87 327.0 176 85.2
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 6.4e-81 306.2 263 59.3
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 1.1e-69 268.9 355 50.1
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.1e-69 268.9 162 77.8
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.3e-52 212.2 172 61.0
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.1e-48 199.1 312 50.0
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 9.4e-48 196.1 364 44.2
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.0e-41 176.0 97 82.5
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 5.5e-32 143.7 289 42.6
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.4e-27 127.1 245 39.6
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.0e-26 125.2 223 40.4
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.7e-26 124.8 100 63.0
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.1e-24 119.4 76 77.6
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 4.3e-16 90.9 114 46.5
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.4e-06 59.3 214 33.6


User provided reference genes

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