Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb068390 Zea mays HOM05D003382 ORTHO05D003930 1.9e-180 636.0 370 100.0
Zm00001eb432200 Zea mays HOM05D003382 ORTHO05D003930 8.4e-149 530.8 453 75.7
Os04g0650366 Oryza sativa ssp. japonica HOM05D003382 ORTHO05D003930 1.9e-55 220.7 203 81.8
Zm00001eb091040 Zea mays HOM05D000062 ORTHO05D013119 4.2e-39 166.4 162 60.5
FvH4_1g16500 Fragaria vesca HOM05D003382 ORTHO05D003930 1.6e-35 154.5 484 28.7
FAN23G3096 Fragaria x ananassa HOM05D003382 ORTHO05D003930 2.1e-35 154.1 484 28.5
FAN19G0190 Fragaria x ananassa HOM05D003382 ORTHO05D003930 2.8e-35 153.7 484 28.5
FAN28G1977 Fragaria x ananassa HOM05D003382 ORTHO05D003930 3.7e-35 153.3 484 28.3
FAN28G2539 Fragaria x ananassa HOM05D003382 ORTHO05D003930 4.8e-35 152.9 484 28.3
RcHm_v2.0_Chr2g0106411 Rosa chinensis HOM05D003382 ORTHO05D003930 4.8e-35 152.9 464 28.7
FAN26G1389 Fragaria x ananassa HOM05D003382 ORTHO05D003930 8.1e-35 152.1 484 28.3
Cfa004049 Carpinus fangiana HOM05D003382 ORTHO05D003930 6.9e-34 149.1 468 27.6
Manes.13G119600 Manihot esculenta HOM05D003382 ORTHO05D003930 1.2e-33 148.3 481 27.9
Phvul.002G016000 Phaseolus vulgaris HOM05D003382 ORTHO05D003930 2.0e-33 147.5 440 28.4
Prupe.6G230500 Prunus persica HOM05D003382 ORTHO05D003930 3.4e-33 146.7 484 28.1
TAR625G0350 Trochodendron aralioides HOM05D003382 ORTHO05D003930 7.6e-33 145.6 483 26.5
MD02G1177600 Malus domestica HOM05D003382 ORTHO05D003930 1.0e-32 145.2 491 26.9
Manes.12G107600 Manihot esculenta HOM05D003382 ORTHO05D003930 1.3e-32 144.8 487 28.1
MD15G1287400 Malus domestica HOM05D003382 ORTHO05D003930 1.7e-32 144.4 493 27.6
VMungo1215G2685 Vigna mungo HOM05D003382 ORTHO05D003930 2.2e-32 144.1 440 28.6
PGR004G0325 Punica granatum HOM05D003382 ORTHO05D003930 2.9e-32 143.7 485 29.1
Sed0013280 Sechium edule HOM05D003382 ORTHO05D003930 1.1e-31 141.7 445 27.0
arahy.Tifrunner.gnm1.ann1.27CBEW Arachis hypogaea HOM05D003382 ORTHO05D003930 1.4e-31 141.4 480 27.3
CsaV3_6G043470 Cucumis sativus L. HOM05D003382 ORTHO05D003930 1.4e-31 141.4 492 26.0
TWI09G1091 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 1.9e-31 141.0 455 27.5
Dinv30023 Davidia involucrata HOM05D003382 ORTHO05D003930 2.5e-31 140.6 465 28.0
TAR376G0471 Trochodendron aralioides HOM05D003382 ORTHO05D003930 2.5e-31 140.6 447 26.8
CANSAT25G0401 Cannabis sativa HOM05D003382 ORTHO05D003930 4.2e-31 139.8 454 27.5
Sabra07G0042400 Salix brachista HOM05D003382 ORTHO05D003930 4.2e-31 139.8 490 26.9
TAR628G1387 Trochodendron aralioides HOM05D003382 ORTHO05D003930 4.2e-31 139.8 441 27.9
Aqoxy5G01170 Aquilegia oxysepala HOM05D003382 ORTHO05D003930 5.5e-31 139.4 463 26.3
GSVIVG01022064001 Vitis vinifera HOM05D003382 ORTHO05D003930 7.1e-31 139.0 457 27.4
Sed0001836 Sechium edule HOM05D003382 ORTHO05D003930 9.3e-31 138.7 445 26.7
ClCG01G016990 Citrullus lanatus HOM05D003382 ORTHO05D003930 1.2e-30 138.3 479 25.7
Glyma.16G095800 Glycine max HOM05D003382 ORTHO05D003930 1.2e-30 138.3 488 27.5
QL06p040205 Quercus lobata HOM05D003382 ORTHO05D003930 1.6e-30 137.9 483 29.4
Duzib264G1059 Durio zibethinus HOM05D003382 ORTHO05D003930 2.1e-30 137.5 481 28.3
Psat2g028760 Pisum sativum HOM05D003382 ORTHO05D003930 2.1e-30 137.5 471 27.2
COL.COLO4_11466 Corchorus olitorius HOM05D003382 ORTHO05D003930 4.6e-30 136.3 482 27.8
TWI73G0794 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 4.6e-30 136.3 462 27.5
arahy.Tifrunner.gnm1.ann1.S4MMCZ Arachis hypogaea HOM05D003382 ORTHO05D003930 6.0e-30 136.0 497 27.2
Sc03g0001810 Simmondsia chinensis HOM05D003382 ORTHO05D003930 7.9e-30 135.6 459 27.7
Dinv26854 Davidia involucrata HOM05D003382 ORTHO05D003930 1.0e-29 135.2 473 26.6
Glyma.11G053000 Glycine max HOM05D003382 ORTHO05D003930 1.0e-29 135.2 457 27.4
Medtr4g094912 Medicago truncatula HOM05D003382 ORTHO05D003930 1.0e-29 135.2 443 27.5
Lsat_1_v5_gn_2_85701 Lactuca sativa HOM05D003382 ORTHO05D003930 1.3e-29 134.8 442 26.2
Eucgr.I00880 Eucalyptus grandis HOM05D003382 ORTHO05D003930 1.8e-29 134.4 469 26.2
Haze_15362 Corylus avellana HOM05D003382 ORTHO05D003930 2.3e-29 134.0 448 26.8
Duzib187G0504 Durio zibethinus HOM05D003382 ORTHO05D003930 2.3e-29 134.0 479 26.7
Thhalv10024924m.g Eutrema salsugineum HOM05D003382 ORTHO05D003930 2.3e-29 134.0 472 26.5
Gohir.A11G196300 Gossypium hirsutum HOM05D003382 ORTHO05D003930 2.3e-29 134.0 462 27.5
BraA01t00166Z Brassica rapa HOM05D003382 ORTHO05D003930 3.0e-29 133.7 487 26.1
AUR62038239 Chenopodium quinoa HOM05D003382 ORTHO05D003930 3.0e-29 133.7 324 31.5
Glyma.17G168400 Glycine max HOM05D003382 ORTHO05D003930 3.0e-29 133.7 501 26.7
Potri.007G047500 Populus trichocarpa HOM05D003382 ORTHO05D003930 3.0e-29 133.7 474 25.9
Ciclev10025401m.g Citrus clementina HOM05D003382 ORTHO05D003930 3.9e-29 133.3 485 27.4
Psat0s1867g0120 Pisum sativum HOM05D003382 ORTHO05D003930 3.9e-29 133.3 508 26.8
EL10Ac6g15703 Beta vulgaris HOM05D003382 ORTHO05D003930 5.1e-29 132.9 455 26.4
Cc07_g06350 Coffea canephora HOM05D003382 ORTHO05D003930 5.1e-29 132.9 457 26.7
HanXRQChr14g0460431 Helianthus annuus HOM05D003382 ORTHO05D003930 5.1e-29 132.9 471 25.9
Lj2g0012816 Lotus japonicus HOM05D003382 ORTHO05D003930 5.1e-29 132.9 497 28.2
Solyc11g011850.2 Solanum lycopersicum HOM05D003382 ORTHO05D003930 5.1e-29 132.9 437 26.3
Sopen11g006680 Solanum pennellii HOM05D003382 ORTHO05D003930 5.1e-29 132.9 437 26.3
PGSC0003DMG400013327 Solanum tuberosum HOM05D003382 ORTHO05D003930 5.1e-29 132.9 436 25.9
AT5G67230 Arabidopsis thaliana HOM05D003382 ORTHO05D003930 6.7e-29 132.5 474 26.4
Sp7g34880 Schrenkiella parvula HOM05D003382 ORTHO05D003930 6.7e-29 132.5 459 25.9
VMungo0251G2741 Vigna mungo HOM05D003382 ORTHO05D003930 6.7e-29 132.5 419 27.9
Lj4g0013634 Lotus japonicus HOM05D003382 ORTHO05D003930 8.7e-29 132.1 475 27.2
Thecc.01G062100 Theobroma cacao HOM05D003382 ORTHO05D003930 8.7e-29 132.1 481 26.8
Zm00001eb231480 Zea mays HOM05D003382 ORTHO05D013119 1.1e-28 131.7 131 58.8
Carub.0008s2728 Capsella rubella HOM05D003382 ORTHO05D003930 1.5e-28 131.3 437 26.1
CiPaw.01G014100 Carya illinoinensis HOM05D003382 ORTHO05D003930 1.5e-28 131.3 506 26.9
Gorai.007G216800 Gossypium raimondii HOM05D003382 ORTHO05D003930 1.5e-28 131.3 462 27.1
SGA_v2.0_scaffold15G07357 Striga asiatica HOM05D003382 ORTHO05D003930 1.5e-28 131.3 480 26.7
MSTRG.15375 Avicennia marina HOM05D003382 ORTHO05D003930 1.9e-28 131.0 458 26.4
BcaNung02528 Brassica carinata HOM05D003382 ORTHO05D003930 1.9e-28 131.0 481 28.1
C01p01910 Brassica napus HOM05D003382 ORTHO05D003930 1.9e-28 131.0 481 28.1
BolC1t00183H Brassica oleracea HOM05D003382 ORTHO05D003930 1.9e-28 131.0 482 26.6
Thhalv10004084m.g Eutrema salsugineum HOM05D003382 ORTHO05D003930 1.9e-28 131.0 436 26.6
Medtr5g016600 Medicago truncatula HOM05D003382 ORTHO05D003930 1.9e-28 131.0 445 26.7
Actinidia03805 Actinidia chinensis HOM05D003382 ORTHO05D003930 2.5e-28 130.6 470 26.2
CiPaw.02G007100 Carya illinoinensis HOM05D003382 ORTHO05D003930 2.5e-28 130.6 478 25.7
AUR62003925 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.5e-28 130.6 450 26.7
DCAR_021478 Daucus carota HOM05D003382 ORTHO05D003930 2.5e-28 130.6 482 25.7
PSO170G3452 Papaver somniferum HOM05D003382 ORTHO05D003930 2.5e-28 130.6 436 25.2
Gohir.D03G025200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 3.3e-28 130.2 478 27.8
Potri.005G141500 Populus trichocarpa HOM05D003382 ORTHO05D003930 3.3e-28 130.2 481 26.6
Sp2g29440 Schrenkiella parvula HOM05D003382 ORTHO05D003930 3.3e-28 130.2 437 26.5
MSTRG.3440 Avicennia marina HOM05D003382 ORTHO05D003930 5.7e-28 129.4 480 26.7
Gohir.A02G155500 Gossypium hirsutum HOM05D003382 ORTHO05D003930 5.7e-28 129.4 477 27.3
HanXRQChr15g0491931 Helianthus annuus HOM05D003382 ORTHO05D003930 5.7e-28 129.4 468 25.6
AT4G36890 Arabidopsis thaliana HOM05D003382 ORTHO05D003930 7.4e-28 129.0 464 26.1
ECA232G1178 Erigeron canadensis HOM05D003382 ORTHO05D003930 7.4e-28 129.0 444 26.4
THA.LOC104819856 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 7.4e-28 129.0 500 26.2
Gorai.003G026800 Gossypium raimondii HOM05D003382 ORTHO05D003930 9.6e-28 128.6 478 28.0
Hma1.2p1_0017F.1_g011810 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 9.6e-28 128.6 463 25.3
Hund16361 Selenicereus undatus HOM05D003382 ORTHO05D003930 9.6e-28 128.6 472 27.8
THA.LOC104807598 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 9.6e-28 128.6 477 27.0
THA.LOC104827351 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 9.6e-28 128.6 437 27.7
Gohir.D11G202200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 1.3e-27 128.3 458 26.4
Lsat_1_v5_gn_4_164401 Lactuca sativa HOM05D003382 ORTHO05D003930 1.6e-27 127.9 446 24.7
TPR.G26871 Trifolium pratense HOM05D003382 ORTHO05D003930 2.1e-27 127.5 461 25.8
Lalb_Chr05g0213401 Lupinus albus HOM05D003382 ORTHO05D003930 3.7e-27 126.7 441 25.9
Zm00001eb273460 Zea mays HOM05D003382 ORTHO05D003930 3.7e-27 126.7 339 28.3
CDE01G0400 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 4.8e-27 126.3 435 24.6
Duzib147G0315 Durio zibethinus HOM05D003382 ORTHO05D003930 4.8e-27 126.3 481 27.0
Aa31LG6G14090 Aethionema arabicum HOM05D003382 ORTHO05D003930 6.3e-27 125.9 489 24.9
SGA_v2.0_scaffold143G35795 Striga asiatica HOM05D003382 ORTHO05D003930 6.3e-27 125.9 436 26.4
AL7G13650 Arabidopsis lyrata HOM05D003382 ORTHO05D003930 8.2e-27 125.6 464 25.6
CARHR280400 Cardamine hirsuta HOM05D003382 ORTHO05D003930 8.2e-27 125.6 475 25.1
MELO3C007577.2 Cucumis melo HOM05D003382 ORTHO05D003930 8.2e-27 125.6 455 25.3
Lalb_Chr09g0323331 Lupinus albus HOM05D003382 ORTHO05D003930 8.2e-27 125.6 448 25.9
Lalb_Chr16g0378671 Lupinus albus HOM05D003382 ORTHO05D003930 8.2e-27 125.6 489 27.0
Rhsim08G0098200 Rhododendron simsii HOM05D003382 ORTHO05D003930 8.2e-27 125.6 478 26.6
Hma1.2p1_2648F.1_g326090 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 1.1e-26 125.2 444 25.2
ATR0762G014 Amborella trichopoda HOM05D003382 ORTHO05D003930 1.4e-26 124.8 442 24.4
CSS0022388 Camellia sinensis var. sinensis HOM05D003382 ORTHO05D003930 1.4e-26 124.8 453 29.4
Carub.0007s0306 Capsella rubella HOM05D003382 ORTHO05D003930 1.4e-26 124.8 476 25.4
PSO210G2217 Papaver somniferum HOM05D003382 ORTHO05D003930 1.8e-26 124.4 436 24.3
CAN.G222.166 Capsicum annuum HOM05D003382 ORTHO05D003930 2.4e-26 124.0 435 25.1
Ca_24746_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 2.4e-26 124.0 471 26.8
Zm00001eb225770 Zea mays HOM05D003382 ORTHO05D003930 2.4e-26 124.0 447 27.5
TPR.G14589 Trifolium pratense HOM05D003382 ORTHO05D003930 3.1e-26 123.6 452 27.0
A07p16740 Brassica napus HOM05D003382 ORTHO05D003930 4.1e-26 123.2 443 26.2
BraA07t29399Z Brassica rapa HOM05D003382 ORTHO05D003930 4.1e-26 123.2 443 26.2
A01p01740 Brassica napus HOM05D003382 ORTHO05D003930 5.3e-26 122.9 510 25.3
Ca_22129_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 1.2e-25 121.7 447 26.4
Lj7A75T29 Lonicera japonica HOM05D003382 ORTHO05D003930 1.5e-25 121.3 456 24.3
Oeu014792.2 Olea europaea HOM05D003382 ORTHO05D003930 1.5e-25 121.3 453 25.4
Rhsim10G0113400 Rhododendron simsii HOM05D003382 ORTHO05D003930 1.5e-25 121.3 469 24.7
DCAR_025752 Daucus carota HOM05D003382 ORTHO05D003930 2.0e-25 120.9 456 23.2
Sopen00g006600 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-25 120.9 383 26.9
BolC7t42967H Brassica oleracea HOM05D003382 ORTHO05D003930 2.6e-25 120.6 442 26.2
unitig_21.g20471 Utricularia gibba HOM05D003382 ORTHO05D003930 2.6e-25 120.6 468 25.4
Migut.L00178 Erythranthe guttata HOM05D003382 ORTHO05D003930 4.5e-25 119.8 465 31.6
Eucgr.H02219 Eucalyptus grandis HOM05D003382 ORTHO05D003930 4.5e-25 119.8 470 25.3
Oeu013240.1 Olea europaea HOM05D003382 ORTHO05D003930 4.5e-25 119.8 439 29.2
Aa31LG1G15760 Aethionema arabicum HOM05D003382 ORTHO05D003930 5.9e-25 119.4 442 24.7
C07p24470 Brassica napus HOM05D003382 ORTHO05D003930 5.9e-25 119.4 442 26.0
PSO541G0593 Papaver somniferum HOM05D003382 ORTHO05D003930 5.9e-25 119.4 435 23.7
PSO675G2844 Papaver somniferum HOM05D003382 ORTHO05D003930 5.9e-25 119.4 435 23.7
Cpa.g.sc55.103 Carica papaya HOM05D003382 ORTHO05D003930 1.0e-24 118.6 438 26.9
BcaC06g34805 Brassica carinata HOM05D003382 ORTHO05D003930 1.7e-24 117.9 443 26.0
unitig_744.g24374 Utricularia gibba HOM05D003382 ORTHO05D003930 2.9e-24 117.1 450 24.9
Sabra05G0112900 Salix brachista HOM05D003382 ORTHO05D003930 5.0e-24 116.3 463 25.3
CDE02G3038 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 6.5e-24 115.9 342 25.7
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 6.5e-24 115.9 350 26.3
BcaB02g09942 Brassica carinata HOM05D003382 ORTHO05D003930 4.2e-23 113.2 436 25.5
Oeu009828.1 Olea europaea HOM05D003382 ORTHO05D003930 5.5e-23 112.8 435 26.2
Lj7A81T14 Lonicera japonica HOM05D003382 ORTHO05D003930 9.3e-23 112.1 431 26.0
Zm00001eb037320 Zea mays HOM05D003382 ORTHO05D003930 9.3e-23 112.1 68 75.0
Nitab4.5_0002214g0040 Nicotiana tabacum HOM05D003382 ORTHO05D003930 1.6e-22 111.3 180 33.9
Nitab4.5_0002465g0060 Nicotiana tabacum HOM05D003382 ORTHO05D003930 1.6e-22 111.3 180 33.9
Lj4A155G86 Lonicera japonica HOM05D003382 ORTHO05D003930 3.5e-22 110.2 182 34.1
Migut.H00405 Erythranthe guttata HOM05D003382 ORTHO05D003930 6.1e-22 109.4 462 32.0
Sc07g0000690 Simmondsia chinensis HOM05D003382 ORTHO05D003930 6.1e-22 109.4 458 26.2
SHI34083 Sapria himalayana HOM05D003382 ORTHO05D003930 1.3e-21 108.2 403 26.8
Peaxi162Scf00078g01420 Petunia axillaris HOM05D003382 ORTHO05D003930 3.9e-21 106.7 180 32.8
ECA238G0958 Erigeron canadensis HOM05D003382 ORTHO05D003930 6.7e-21 105.9 183 32.8
HanXRQChr01g0030391 Helianthus annuus HOM05D003382 ORTHO05D003930 1.6e-19 101.3 182 31.3
vmacro05261 Vaccinium macrocarpon HOM05D003382 ORTHO05D003930 3.7e-19 100.1 417 24.2
vmacro17969 Vaccinium macrocarpon HOM05D003382 ORTHO05D003930 1.1e-18 98.6 182 34.1
Atru.chr3.265 Acer truncatum HOM05D003382 ORTHO05D003930 1.8e-18 97.8 142 35.2
Gorai.004G051000 Gossypium raimondii HOM05D003382 ORTHO05D003930 5.3e-18 96.3 180 34.4
Actinidia16465 Actinidia chinensis HOM05D003382 ORTHO05D003930 6.9e-18 95.9 171 36.8
Gorai.004G051100 Gossypium raimondii HOM05D003382 ORTHO05D003930 1.0e-16 92.0 143 35.7
HanXRQChr01g0004101 Helianthus annuus HOM05D003382 ORTHO05D003930 1.3e-16 91.7 128 34.4
SEGI_35989 Sequoiadendron giganteum HOM05D003382 ORTHO05D003930 8.5e-16 89.0 139 33.8
TAR381G1333 Trochodendron aralioides HOM05D003382 ORTHO05D003930 1.2e-14 85.1 116 34.5
Pp3c15_16210 Physcomitrium patens HOM05D003382 ORTHO05D003930 2.7e-14 84.0 363 24.2
Atru.chr3.266 Acer truncatum HOM05D003382 ORTHO05D003930 1.4e-13 81.6 261 31.0
Zm00001eb098600 Zea mays HOM05D003382 ORTHO05D003930 1.4e-13 81.6 117 33.3
Nn1g04747 Nelumbo nucifera HOM05D003382 ORTHO05D003930 7.4e-12 75.9 217 31.3
Glyma.01G189200 Glycine max HOM05D003382 ORTHO05D003930 2.8e-11 73.9 220 31.8
SMO172G0036 Selaginella moellendorffii HOM05D003382 ORTHO05D003930 8.2e-11 72.4 421 22.3
Pp3c9_16190 Physcomitrium patens HOM05D003382 ORTHO05D003930 2.4e-10 70.9 343 22.7
CARHR245620 Cardamine hirsuta HOM05D003382 ORTHO05D003930 9.1e-10 68.9 237 30.4
Solyc01g020130.3 Solanum lycopersicum HOM05D003382 ORTHO05D003930 2.0e-09 67.8 186 32.3
TAR381G0691 Trochodendron aralioides HOM05D003382 ORTHO05D003930 7.7e-09 65.9 90 43.3
ECA246G4334 Erigeron canadensis HOM05D003382 ORTHO05D003930 3.8e-08 63.5 127 32.3
Pp3c18_10000 Physcomitrium patens HOM05D003382 ORTHO05D003930 1.9e-07 61.2 331 22.4
Lj4C155T11 Lonicera japonica HOM05D003382 ORTHO05D003930 4.2e-07 60.1 180 28.9


User provided reference genes

Program Settings