Gene: Sopen11g006680

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g006680
  • Transcript Identifier Sopen11g006680.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 4846253-4850828 : negative

Gene Family Information

  • ID HOM05D003382
  • #Genes/#Species 203/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g006680.1

Descriptions

  • Description Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog) | AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9. | IRREGULAR XYLEM 14-LIKE (IRX14-L) | CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 | BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045492
ISO
PLAZA Integrative Orthologyxylan biosynthetic process AT4G36890
GO:0010246
ISO
PLAZA Integrative Orthologyrhamnogalacturonan I biosynthetic process AT4G36890
GO:0048354
ISO
PLAZA Integrative Orthologymucilage biosynthetic process involved in seed coat development AT4G36890
GO:0048367
ISO
PLAZA Integrative Orthologyshoot system development AT4G36890
GO:0010417
ISO
PLAZA Integrative Orthologyglucuronoxylan biosynthetic process AT5G67230
GO:0045491
ISO
PLAZA Integrative Orthologyxylan metabolic process AT4G36890
GO:0048358
ISO
PLAZA Integrative Orthologymucilage pectin biosynthetic process AT4G36890
GO:0080001
ISO
PLAZA Integrative Orthologymucilage extrusion from seed coat AT4G36890
GO:0010051
ISO
PLAZA Integrative Orthologyxylem and phloem pattern formation AT4G36890
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development AT4G36890

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042285
ISO
PLAZA Integrative Orthologyxylosyltransferase activity AT5G67230
GO:0015018
IEA
InterProgalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
GO:0047517
ISO
PLAZA Integrative Orthology1,4-beta-D-xylan synthase activity AT4G36890

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005768
ISO
PLAZA Integrative Orthologyendosome AT4G36890
GO:0005802
ISO
PLAZA Integrative Orthologytrans-Golgi network AT4G36890
GO:0000138
ISO
PLAZA Integrative OrthologyGolgi trans cisterna AT4G36890
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT5G67230
GO:0016020
IEA
InterPromembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005027 Glycosyl transferase, family 43
IPR029044 Nucleotide-diphospho-sugar transferases
Mapman id Description
21.2.2.1.3.3 Cell wall organisation.hemicellulose.xylan.biosynthesis.xylosyltransferase activities.xylosyltransferase (IRX14)