Gene: Sopen00g006600
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen00g006600
- Transcript Identifier Sopen00g006600.1
- Gene Type Coding gene
- Location Spenn-ch00 : 18014031-18020529 : positive
Gene Family Information
- ID HOM05D000002
- #Genes/#Species 26594/98
- Phylogenetic origin
- ID ORTHO05D000001
- #Genes/#Species 28434/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen00g006600.1
Descriptions
- Description Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog) | AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9. | IRREGULAR XYLEM 14-LIKE (IRX14-L) | CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 | BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015074 | IEA | InterPro | DNA integration |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015018 | IEA | InterPro | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | InterPro | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005027 | Glycosyl transferase, family 43 |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR001878 | Zinc finger, CCHC-type |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR036397 | Ribonuclease H superfamily |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR025724 | GAG-pre-integrase domain |
| IPR001584 | Integrase, catalytic core |
| IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
| IPR029044 | Nucleotide-diphospho-sugar transferases |
| Mapman id | Description |
|---|---|
| 21.2.2.1.3.3 | Cell wall organisation.hemicellulose.xylan.biosynthesis.xylosyltransferase activities.xylosyltransferase (IRX14) |