Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb059170 Zea mays HOM05D005848 ORTHO05D007532 0.0e+00 1305.8 643 100.0
Os03g0775300 Oryza sativa ssp. japonica HOM05D005848 ORTHO05D007532 2.6e-270 935.3 657 73.4
MBI16_g31221_MAGBIO Magnolia biondii HOM05D005848 ORTHO05D007532 5.6e-257 891.0 652 67.8
HPP92_012274 Vanilla planifolia HOM05D005848 ORTHO05D007532 2.8e-256 888.6 648 69.3
TAR381G1506 Trochodendron aralioides HOM05D005848 ORTHO05D007532 1.1e-255 886.7 648 67.6
Cpa.g.sc36.76 Carica papaya HOM05D005848 ORTHO05D007532 2.6e-254 882.1 643 68.4
CsaV3_2G028680 Cucumis sativus L. HOM05D005848 ORTHO05D007532 5.8e-254 880.9 639 68.1
Sabra02G0198400 Salix brachista HOM05D005848 ORTHO05D007532 2.2e-253 879.0 645 68.5
TWI56G0568 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 2.2e-253 879.0 644 68.8
Dinv36081 Davidia involucrata HOM05D005848 ORTHO05D007532 1.9e-252 875.9 641 68.2
MELO3C010940.2 Cucumis melo HOM05D005848 ORTHO05D007532 4.1e-252 874.8 637 67.2
TWI36G0400 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 9.2e-252 873.6 639 68.4
vmacro11198 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 9.2e-252 873.6 643 66.7
Gorai.002G128000 Gossypium raimondii HOM05D005848 ORTHO05D007532 1.6e-251 872.8 636 67.1
Gohir.D01G104100 Gossypium hirsutum HOM05D005848 ORTHO05D007532 3.5e-251 871.7 636 67.0
Potri.002G260700 Populus trichocarpa HOM05D005848 ORTHO05D007532 3.5e-251 871.7 640 68.1
Sed0003570 Sechium edule HOM05D005848 ORTHO05D007532 3.5e-251 871.7 635 67.2
Thecc.08G026700 Theobroma cacao HOM05D005848 ORTHO05D007532 6.0e-251 870.9 633 67.3
vmacro04526 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 7.8e-251 870.5 643 66.4
Gohir.A01G115800 Gossypium hirsutum HOM05D005848 ORTHO05D007532 1.0e-250 870.2 636 66.8
Prupe.1G379500 Prunus persica HOM05D005848 ORTHO05D007532 2.3e-250 869.0 641 67.9
ClCG08G015110 Citrullus lanatus HOM05D005848 ORTHO05D007532 3.0e-250 868.6 661 65.4
MD08G1031900 Malus domestica HOM05D005848 ORTHO05D007532 5.1e-250 867.8 641 67.4
Duzib116G0609 Durio zibethinus HOM05D005848 ORTHO05D007532 1.5e-249 866.3 630 67.1
Nn1g04993 Nelumbo nucifera HOM05D005848 ORTHO05D007532 2.5e-249 865.5 643 66.6
Nitab4.5_0005373g0030 Nicotiana tabacum HOM05D005848 ORTHO05D007532 2.5e-249 865.5 644 67.2
Aqoxy6G01108 Aquilegia oxysepala HOM05D005848 ORTHO05D007532 4.3e-249 864.8 641 67.1
Nitab4.5_0006280g0010 Nicotiana tabacum HOM05D005848 ORTHO05D007532 7.3e-249 864.0 647 66.6
arahy.Tifrunner.gnm1.ann1.K656SJ Arachis hypogaea HOM05D005848 ORTHO05D007532 9.5e-249 863.6 649 66.1
arahy.Tifrunner.gnm1.ann1.R41T5G Arachis hypogaea HOM05D005848 ORTHO05D007532 9.5e-249 863.6 649 66.1
PGR031G0193 Punica granatum HOM05D005848 ORTHO05D007532 9.5e-249 863.6 644 66.9
Sopen04g033930 Solanum pennellii HOM05D005848 ORTHO05D007532 9.5e-249 863.6 649 65.6
FAN20G0176 Fragaria x ananassa HOM05D005848 ORTHO05D007532 2.8e-248 862.1 642 66.8
FAN20G3094 Fragaria x ananassa HOM05D005848 ORTHO05D007532 2.8e-248 862.1 642 66.8
Peaxi162Scf00417g01212 Petunia axillaris HOM05D005848 ORTHO05D007532 2.8e-248 862.1 642 66.4
QL02p008596 Quercus lobata HOM05D005848 ORTHO05D007532 2.8e-248 862.1 638 68.0
Rhsim07G0239300 Rhododendron simsii HOM05D005848 ORTHO05D007532 2.8e-248 862.1 643 65.9
Manes.18G027000 Manihot esculenta HOM05D005848 ORTHO05D007532 4.7e-248 861.3 651 66.1
CiPaw.16G056600 Carya illinoinensis HOM05D005848 ORTHO05D007532 6.2e-248 860.9 645 66.7
FvH4_2g39810 Fragaria vesca HOM05D005848 ORTHO05D007532 8.1e-248 860.5 639 66.8
Lsat_1_v5_gn_1_17721 Lactuca sativa HOM05D005848 ORTHO05D007532 1.1e-247 860.1 646 64.9
FAN27G0156 Fragaria x ananassa HOM05D005848 ORTHO05D007532 1.4e-247 859.8 641 66.3
RcHm_v2.0_Chr6g0301031 Rosa chinensis HOM05D005848 ORTHO05D007532 1.4e-247 859.8 643 66.6
CAN.G1226.12 Capsicum annuum HOM05D005848 ORTHO05D007532 1.8e-247 859.4 643 66.4
FAN15G3081 Fragaria x ananassa HOM05D005848 ORTHO05D007532 1.8e-247 859.4 644 66.8
MD15G1027800 Malus domestica HOM05D005848 ORTHO05D007532 2.3e-247 859.0 642 67.0
SalBow7G2715 Salvia bowleyana HOM05D005848 ORTHO05D007532 4.0e-247 858.2 649 66.9
Phvul.001G014532 Phaseolus vulgaris HOM05D005848 ORTHO05D007532 6.8e-247 857.4 633 67.3
Cfa018151 Carpinus fangiana HOM05D005848 ORTHO05D007532 1.2e-246 856.7 640 67.2
Glyma.17G250400 Glycine max HOM05D005848 ORTHO05D007532 1.5e-246 856.3 637 67.2
DCAR_020974 Daucus carota HOM05D005848 ORTHO05D007532 2.6e-246 855.5 643 67.5
Lj5g0008078 Lotus japonicus HOM05D005848 ORTHO05D007532 3.4e-246 855.1 631 67.0
Sc02g0006150 Simmondsia chinensis HOM05D005848 ORTHO05D007532 3.4e-246 855.1 637 65.9
A07p28980 Brassica napus HOM05D005848 ORTHO05D007532 5.8e-246 854.4 636 66.7
BraA07t30539Z Brassica rapa HOM05D005848 ORTHO05D007532 7.6e-246 854.0 636 66.7
PSO541G0294 Papaver somniferum HOM05D005848 ORTHO05D007532 9.9e-246 853.6 642 66.2
THA.LOC104809061 Tarenaya hassleriana HOM05D005848 ORTHO05D007532 1.3e-245 853.2 637 66.1
SGA_v2.0_scaffold54G19521 Striga asiatica HOM05D005848 ORTHO05D007532 2.9e-245 852.0 665 65.1
PSO675G8513 Papaver somniferum HOM05D005848 ORTHO05D007532 3.7e-245 851.7 644 65.4
CANSAT35G0174 Cannabis sativa HOM05D005848 ORTHO05D007532 4.9e-245 851.3 640 65.6
Haze_17969 Corylus avellana HOM05D005848 ORTHO05D007532 8.3e-245 850.5 634 67.7
Eucgr.F01897 Eucalyptus grandis HOM05D005848 ORTHO05D007532 8.3e-245 850.5 654 65.0
VMungo0647G1182 Vigna mungo HOM05D005848 ORTHO05D007532 1.4e-244 849.7 632 66.1
CARHR068530 Cardamine hirsuta HOM05D005848 ORTHO05D007532 1.9e-244 849.4 640 65.5
Migut.C00727 Erythranthe guttata HOM05D005848 ORTHO05D007532 1.9e-244 849.4 660 65.2
Solyc04g080340.3 Solanum lycopersicum HOM05D005848 ORTHO05D007532 1.9e-244 849.4 650 65.4
Lalb_Chr14g0369301 Lupinus albus HOM05D005848 ORTHO05D007532 2.4e-244 849.0 644 66.1
Lj4A40T46 Lonicera japonica HOM05D005848 ORTHO05D007532 3.2e-244 848.6 641 65.8
Glyma.14G075000 Glycine max HOM05D005848 ORTHO05D007532 4.1e-244 848.2 633 66.2
Aa31LG4G5410 Aethionema arabicum HOM05D005848 ORTHO05D007532 5.4e-244 847.8 640 65.5
A07p40790 Brassica napus HOM05D005848 ORTHO05D007532 2.1e-243 845.9 634 67.4
C06p49180 Brassica napus HOM05D005848 ORTHO05D007532 3.5e-243 845.1 633 67.3
Carub.0002s2201 Capsella rubella HOM05D005848 ORTHO05D007532 4.6e-243 844.7 636 65.7
BraA07t31621Z Brassica rapa HOM05D005848 ORTHO05D007532 1.0e-242 843.6 634 67.4
Sp5g30360 Schrenkiella parvula HOM05D005848 ORTHO05D007532 1.0e-242 843.6 645 64.7
Oeu049954.1 Olea europaea HOM05D005848 ORTHO05D007532 1.3e-242 843.2 652 66.0
BolC6t39951H Brassica oleracea HOM05D005848 ORTHO05D007532 2.3e-242 842.4 633 67.1
Hund17082 Selenicereus undatus HOM05D005848 ORTHO05D007532 8.6e-242 840.5 646 64.4
AL2G35110 Arabidopsis lyrata HOM05D005848 ORTHO05D007532 1.5e-241 839.7 645 64.5
CDE01G0181 Ceratophyllum demersum HOM05D005848 ORTHO05D007532 1.5e-241 839.7 658 63.1
Ca_13375_v3 Cicer arietinum L. HOM05D005848 ORTHO05D007532 2.5e-241 839.0 638 64.6
PGSC0003DMG400004542 Solanum tuberosum HOM05D005848 ORTHO05D007532 3.3e-241 838.6 647 64.6
Thhalv10018304m.g Eutrema salsugineum HOM05D005848 ORTHO05D007532 7.3e-241 837.4 600 68.2
Ah.05g173260 Amaranthus hybridus HOM05D005848 ORTHO05D007532 4.7e-240 834.7 637 65.5
AT1G75200 Arabidopsis thaliana HOM05D005848 ORTHO05D007532 4.0e-239 831.6 648 64.2
HanXRQChr02g0042111 Helianthus annuus HOM05D005848 ORTHO05D007532 6.8e-239 830.9 619 66.1
ECA247G2683 Erigeron canadensis HOM05D005848 ORTHO05D007532 1.2e-238 830.1 659 63.6
TPR.G20173 Trifolium pratense HOM05D005848 ORTHO05D007532 5.8e-238 827.8 659 62.8
Psat6g008800 Pisum sativum HOM05D005848 ORTHO05D007532 8.4e-237 823.9 632 65.0
EL10Ac1g00774 Beta vulgaris HOM05D005848 ORTHO05D007532 7.1e-236 820.8 671 63.2
COL.COLO4_26317 Corchorus olitorius HOM05D005848 ORTHO05D007532 1.2e-235 820.1 636 64.0
Ciclev10003946m.g Citrus clementina HOM05D005848 ORTHO05D007532 1.6e-235 819.7 586 67.9
AUR62013733 Chenopodium quinoa HOM05D005848 ORTHO05D007532 4.6e-235 818.1 647 63.1
unitig_37.g12994 Utricularia gibba HOM05D005848 ORTHO05D007532 1.9e-233 812.8 631 64.7
Pp3c8_14160 Physcomitrium patens HOM05D005848 ORTHO05D007532 5.3e-231 804.7 632 62.3
SMO119G0034 Selaginella moellendorffii HOM05D005848 ORTHO05D007532 8.4e-229 797.3 592 65.7
Actinidia22546 Actinidia chinensis HOM05D005848 ORTHO05D007532 4.6e-227 791.6 648 63.1
GSVIVG01009707001 Vitis vinifera HOM05D005848 ORTHO05D007532 1.3e-226 790.0 507 73.2
AagrBONN_evm.TU.Sc2ySwM_362.2225 Anthoceros agrestis HOM05D005848 ORTHO05D007532 8.7e-226 787.3 625 62.4
ATR0733G119 Amborella trichopoda HOM05D005848 ORTHO05D007532 5.6e-225 784.6 638 61.3
Mapoly0010s0191 Marchantia polymorpha HOM05D005848 ORTHO05D007532 9.6e-225 783.9 626 61.3
arahy.Tifrunner.gnm1.ann1.U1EDB6 Arachis hypogaea HOM05D005848 ORTHO05D007532 4.6e-219 765.0 649 61.2
CSS0006033 Camellia sinensis var. sinensis HOM05D005848 ORTHO05D007532 1.4e-215 753.4 595 63.9
BolC6t38398H Brassica oleracea HOM05D005848 ORTHO05D007532 1.8e-215 753.1 499 72.5
Atru.chr13.482 Acer truncatum HOM05D005848 ORTHO05D007532 4.0e-215 751.9 493 73.4
C06p32750 Brassica napus HOM05D005848 ORTHO05D007532 4.0e-215 751.9 643 60.5
BcaB02g07015 Brassica carinata HOM05D005848 ORTHO05D007532 4.5e-214 748.4 476 74.2
AUR62023420 Chenopodium quinoa HOM05D005848 ORTHO05D007532 5.1e-202 708.4 637 57.9
Sed0016731 Sechium edule HOM05D005848 ORTHO05D007532 3.6e-195 685.6 637 58.4
Cre14.g623300 Chlamydomonas reinhardtii HOM05D005848 ORTHO05D007532 1.0e-189 667.5 581 56.8
MCO11G535 Micromonas commoda HOM05D005848 ORTHO05D007532 4.1e-183 645.6 625 53.0
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 6.1e-179 631.7 619 53.3
vmacro04525 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 6.3e-176 621.7 434 70.7
CBR_g42175 Chara braunii HOM05D005848 ORTHO05D007532 7.0e-151 538.5 319 76.5
Actinidia15328 Actinidia chinensis HOM05D005848 ORTHO05D007532 8.3e-144 515.0 637 46.6
MSTRG.1277 Avicennia marina HOM05D005848 ORTHO05D007532 5.6e-132 475.7 458 56.3
Cfa025522 Carpinus fangiana HOM05D005848 ORTHO05D007532 8.1e-131 471.9 647 43.4
Cc10_g02890 Coffea canephora HOM05D005848 ORTHO05D007532 8.6e-125 451.8 258 79.8
Medtr1g022225 Medicago truncatula HOM05D005848 ORTHO05D007532 6.4e-120 435.6 248 80.2
QL02p008579 Quercus lobata HOM05D005848 ORTHO05D007532 1.8e-114 417.5 233 82.0
Medtr1g022235 Medicago truncatula HOM05D005848 ORTHO05D007532 1.1e-106 391.7 379 53.8
Cc10_g02880 Coffea canephora HOM05D005848 ORTHO05D007532 2.9e-104 383.6 389 54.8
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.2e-75 287.7 165 78.2
arahy.Tifrunner.gnm1.ann1.B18DRP Arachis hypogaea HOM05D005848 ORTHO05D007532 4.7e-46 190.3 256 46.5
Os10g0365900 Oryza sativa ssp. japonica HOM05D005848 ORTHO05D007532 2.5e-39 167.9 104 79.8
CBR_g26428 Chara braunii HOM05D005848 ORTHO05D007532 5.2e-29 133.7 289 32.9
Gohir.D05G197166 Gossypium hirsutum HOM05D005848 ORTHO05D007532 1.3e-24 119.0 81 69.1
Hma1.2p1_1139F.1_g260870 Hydrangea macrophylla HOM05D005848 ORTHO05D007532 1.6e-22 112.1 68 77.9
Nn7g38354 Nelumbo nucifera HOM05D005848 ORTHO05D007532 3.3e-15 87.8 59 67.8
Lj6g0011150 Lotus japonicus HOM05D000370 ORTHO05D001366 4.3e-15 87.4 69 63.8
Lj1g0001767 Lotus japonicus HOM05D005848 ORTHO05D038829 1.6e-14 85.5 44 84.1
arahy.Tifrunner.gnm1.ann1.T0WXUF Arachis hypogaea HOM05D005848 ORTHO05D038829 8.1e-14 83.2 73 57.5
Cre01.g039350 Chlamydomonas reinhardtii HOM05D001049 ORTHO05D001986 3.0e-08 64.7 171 27.5
Gohir.A05G194001 Gossypium hirsutum HOM05D005848 ORTHO05D218087 6.6e-08 63.5 40 62.5
Gohir.D05G197232 Gossypium hirsutum HOM05D005848 ORTHO05D047491 6.6e-08 63.5 40 62.5
Gorai.009G202100 Gossypium raimondii HOM05D005848 ORTHO05D047491 6.6e-08 63.5 40 62.5
arahy.Tifrunner.gnm1.ann1.UJY401 Arachis hypogaea HOM05D008504 ORTHO05D010707 3.3e-07 61.2 219 29.2
arahy.Tifrunner.gnm1.ann1.DKU1F8 Arachis hypogaea HOM05D008504 ORTHO05D010707 4.3e-07 60.8 191 29.3
arahy.Tifrunner.gnm1.ann1.WCXU76 Arachis hypogaea HOM05D008504 ORTHO05D010707 5.6e-07 60.5 194 30.4
arahy.Tifrunner.gnm1.ann1.HMY8CZ Arachis hypogaea HOM05D008504 ORTHO05D010707 1.2e-06 59.3 217 28.6
arahy.Tifrunner.gnm1.ann1.3C5L0V Arachis hypogaea HOM05D008504 ORTHO05D010707 1.6e-06 58.9 207 29.5
arahy.Tifrunner.gnm1.ann1.978BNZ Arachis hypogaea HOM05D008504 ORTHO05D010707 1.6e-06 58.9 207 29.5
arahy.Tifrunner.gnm1.ann1.PBP9SE Arachis hypogaea HOM05D008504 ORTHO05D010707 1.6e-06 58.9 219 28.8
DCAR_029529 Daucus carota HOM05D001049 ORTHO05D005951 1.6e-06 58.9 131 33.6
Os01g0733600 Oryza sativa ssp. japonica HOM05D001049 ORTHO05D005951 1.6e-06 58.9 139 30.9
Glyma.18G297800 Glycine max HOM05D001049 ORTHO05D005951 2.1e-06 58.5 158 31.6
MCO06G260 Micromonas commoda HOM05D001049 ORTHO05D005951 2.1e-06 58.5 169 34.9
AagrBONN_evm.TU.Sc2ySwM_340.441 Anthoceros agrestis HOM05D001049 ORTHO05D005951 2.8e-06 58.2 144 31.2
A03p32880 Brassica napus HOM05D001049 ORTHO05D005951 3.6e-06 57.8 144 31.2
arahy.Tifrunner.gnm1.ann1.D90TM1 Arachis hypogaea HOM05D008504 ORTHO05D010707 6.2e-06 57.0 213 29.1
arahy.Tifrunner.gnm1.ann1.L2A829 Arachis hypogaea HOM05D008504 ORTHO05D010707 6.2e-06 57.0 217 28.1
Actinidia15878 Actinidia chinensis HOM05D001049 ORTHO05D005951 8.1e-06 56.6 131 32.8
DCAR_029530 Daucus carota HOM05D001049 ORTHO05D005951 8.1e-06 56.6 131 33.6


User provided reference genes

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