Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb056730 Zea mays HOM05D006635 ORTHO05D008047 2.1e-147 525.8 291 100.0
Os03g0740800 Oryza sativa ssp. japonica HOM05D006635 ORTHO05D008047 1.3e-107 393.7 276 78.3
GSVIVG01018125001 Vitis vinifera HOM05D006635 ORTHO05D008047 2.3e-72 276.6 252 57.9
CSS0008878 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 1.5e-71 273.9 261 57.1
Hma1.2p1_0650F.1_g195460 Hydrangea macrophylla HOM05D006635 ORTHO05D008047 1.5e-71 273.9 244 58.2
HPP92_023529 Vanilla planifolia HOM05D006635 ORTHO05D008047 2.5e-71 273.1 273 56.0
Dinv29905 Davidia involucrata HOM05D006635 ORTHO05D008047 7.2e-71 271.6 213 63.8
Cpa.g.sc58.53 Carica papaya HOM05D006635 ORTHO05D008047 2.1e-70 270.0 235 59.6
Eucgr.H03153 Eucalyptus grandis HOM05D006635 ORTHO05D008047 3.6e-70 269.2 259 56.8
Actinidia08441 Actinidia chinensis HOM05D006635 ORTHO05D008047 8.0e-70 268.1 248 58.5
Haze_11307 Corylus avellana HOM05D006635 ORTHO05D008047 3.0e-69 266.2 255 56.1
Gohir.A10G113600 Gossypium hirsutum HOM05D006635 ORTHO05D008047 6.8e-69 265.0 268 54.9
Cc03_g04920 Coffea canephora HOM05D006635 ORTHO05D008047 1.2e-68 264.2 269 52.8
Haze_11310 Corylus avellana HOM05D006635 ORTHO05D008047 1.2e-68 264.2 255 55.7
Gorai.011G171700 Gossypium raimondii HOM05D006635 ORTHO05D008047 1.2e-68 264.2 265 55.1
TWI53G1330 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 1.2e-68 264.2 239 58.6
TWI53G1448 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 1.2e-68 264.2 239 58.6
Prupe.1G031500 Prunus persica HOM05D006635 ORTHO05D008047 1.5e-68 263.8 247 56.3
Nitab4.5_0000302g0050 Nicotiana tabacum HOM05D006635 ORTHO05D008047 2.6e-68 263.1 264 53.4
Aqoxy5G00314 Aquilegia oxysepala HOM05D006635 ORTHO05D008047 3.4e-68 262.7 260 55.0
Gohir.D10G153800 Gossypium hirsutum HOM05D006635 ORTHO05D008047 3.4e-68 262.7 265 54.7
CANSAT78G1035 Cannabis sativa HOM05D006635 ORTHO05D008047 7.5e-68 261.5 242 57.4
COL.COLO4_15799 Corchorus olitorius HOM05D006635 ORTHO05D008047 7.5e-68 261.5 246 55.7
MD13G1208000 Malus domestica HOM05D006635 ORTHO05D008047 7.5e-68 261.5 249 56.2
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 2.2e-67 260.0 252 54.8
PSO832G2723 Papaver somniferum HOM05D006635 ORTHO05D008047 2.8e-67 259.6 265 53.6
AUR62002251 Chenopodium quinoa HOM05D006635 ORTHO05D008047 3.7e-67 259.2 245 54.7
CiPaw.01G189900 Carya illinoinensis HOM05D006635 ORTHO05D008047 4.9e-67 258.8 255 54.1
RcHm_v2.0_Chr1g0323991 Rosa chinensis HOM05D006635 ORTHO05D008047 6.3e-67 258.5 260 55.0
CAN.G118.6 Capsicum annuum HOM05D006635 ORTHO05D008047 8.3e-67 258.1 259 53.7
PGR004G0241 Punica granatum HOM05D006635 ORTHO05D008047 8.3e-67 258.1 202 63.9
PGSC0003DMG400016282 Solanum tuberosum HOM05D006635 ORTHO05D008047 1.4e-66 257.3 259 53.3
PSO210G4915 Papaver somniferum HOM05D006635 ORTHO05D008047 1.8e-66 256.9 265 52.8
Potri.010G075900 Populus trichocarpa HOM05D006635 ORTHO05D008047 2.4e-66 256.5 257 52.9
FvH4_2g07190 Fragaria vesca HOM05D006635 ORTHO05D008047 4.1e-66 255.8 260 54.6
FAN24G3344 Fragaria x ananassa HOM05D006635 ORTHO05D008047 5.4e-66 255.4 260 54.6
Manes.15G037200 Manihot esculenta HOM05D006635 ORTHO05D008047 5.4e-66 255.4 267 53.2
Thecc.04G246700 Theobroma cacao HOM05D006635 ORTHO05D008047 5.4e-66 255.4 274 51.1
arahy.Tifrunner.gnm1.ann1.20YP49 Arachis hypogaea HOM05D006635 ORTHO05D008047 1.2e-65 254.2 247 53.4
FAN20G2319 Fragaria x ananassa HOM05D006635 ORTHO05D008047 3.5e-65 252.7 246 54.9
THA.LOC104808600 Tarenaya hassleriana HOM05D006635 ORTHO05D008047 4.5e-65 252.3 276 51.8
Ciclev10005689m.g Citrus clementina HOM05D006635 ORTHO05D008047 5.9e-65 251.9 270 52.6
Nn1g02620 Nelumbo nucifera HOM05D006635 ORTHO05D008047 5.9e-65 251.9 292 51.0
Nitab4.5_0008721g0010 Nicotiana tabacum HOM05D006635 ORTHO05D008047 5.9e-65 251.9 222 58.1
Sc19g0003750 Simmondsia chinensis HOM05D006635 ORTHO05D008047 1.0e-64 251.1 273 51.6
arahy.Tifrunner.gnm1.ann1.P8HXAC Arachis hypogaea HOM05D006635 ORTHO05D008047 1.3e-64 250.8 261 51.3
Lj6A657T45 Lonicera japonica HOM05D006635 ORTHO05D008047 1.3e-64 250.8 216 58.3
Sopen06g018890 Solanum pennellii HOM05D006635 ORTHO05D008047 2.3e-64 250.0 273 50.5
MSTRG.4101 Avicennia marina HOM05D006635 ORTHO05D008047 2.9e-64 249.6 216 59.7
Lalb_Chr02g0150381 Lupinus albus HOM05D006635 ORTHO05D008047 2.9e-64 249.6 248 52.8
Solyc06g053770.4 Solanum lycopersicum HOM05D006635 ORTHO05D008047 5.0e-64 248.8 268 51.1
Migut.G00439 Erythranthe guttata HOM05D006635 ORTHO05D008047 1.1e-63 247.7 264 52.7
ECA240G1129 Erigeron canadensis HOM05D000856 ORTHO05D002253 1.5e-63 247.3 246 53.3
Sc19g0005210 Simmondsia chinensis HOM05D006635 ORTHO05D008047 1.9e-63 246.9 273 50.9
HanXRQChr13g0424511 Helianthus annuus HOM05D006635 ORTHO05D008047 3.3e-63 246.1 253 52.6
Ciclev10005690m.g Citrus clementina HOM05D006635 ORTHO05D008047 4.3e-63 245.7 268 50.7
Sed0017322 Sechium edule HOM05D006635 ORTHO05D008047 4.3e-63 245.7 241 53.1
Atru.chr4.2211 Acer truncatum HOM05D006635 ORTHO05D008047 1.2e-62 244.2 260 50.4
Ciclev10007171m.g Citrus clementina HOM05D006635 ORTHO05D008047 3.6e-62 242.7 248 52.4
DCAR_027282 Daucus carota HOM05D006635 ORTHO05D008047 3.6e-62 242.7 259 53.3
Sp3g20780 Schrenkiella parvula HOM05D006635 ORTHO05D008047 3.6e-62 242.7 247 51.8
Lj5g0017333 Lotus japonicus HOM05D006635 ORTHO05D008047 6.1e-62 241.9 253 50.2
vmacro15410 Vaccinium macrocarpon HOM05D006635 ORTHO05D008047 6.1e-62 241.9 314 48.1
ATR0824G049 Amborella trichopoda HOM05D006635 ORTHO05D008047 1.4e-61 240.7 243 51.9
Ca_09839_v3 Cicer arietinum L. HOM05D006635 ORTHO05D008047 4.0e-61 239.2 252 50.8
MELO3C018624.2 Cucumis melo HOM05D006635 ORTHO05D008047 1.2e-60 237.7 245 53.1
CsaV3_7G006710 Cucumis sativus L. HOM05D006635 ORTHO05D008047 1.2e-60 237.7 239 53.6
Psat4g107880 Pisum sativum HOM05D006635 ORTHO05D008047 1.5e-60 237.3 245 50.2
AT3G23100 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 2.6e-60 236.5 240 52.1
BcaB04g20471 Brassica carinata HOM05D006635 ORTHO05D008047 4.4e-60 235.7 200 57.5
Ah.13g066120 Amaranthus hybridus HOM05D006635 ORTHO05D008047 9.8e-60 234.6 239 51.0
ClCG09G015590 Citrullus lanatus HOM05D006635 ORTHO05D008047 9.8e-60 234.6 252 51.2
Oeu058885.1 Olea europaea HOM05D006635 ORTHO05D008047 1.3e-59 234.2 267 48.3
FAN27G3431 Fragaria x ananassa HOM05D006635 ORTHO05D008047 4.9e-59 232.3 284 47.5
Medtr1g075330 Medicago truncatula HOM05D006635 ORTHO05D008047 4.9e-59 232.3 267 49.1
Glyma.10G184800 Glycine max HOM05D006635 ORTHO05D008047 6.4e-59 231.9 264 49.2
AL3G37550 Arabidopsis lyrata HOM05D006635 ORTHO05D008047 8.3e-59 231.5 240 51.2
BcaC09g49245 Brassica carinata HOM05D006635 ORTHO05D008047 8.3e-59 231.5 268 48.5
Carub.0003s2327 Capsella rubella HOM05D006635 ORTHO05D008047 1.4e-58 230.7 249 50.6
Glyma.20G205600 Glycine max HOM05D006635 ORTHO05D008047 1.4e-58 230.7 264 49.6
A01p31980 Brassica napus HOM05D006635 ORTHO05D008047 1.9e-58 230.3 203 56.7
BraA01t03324Z Brassica rapa HOM05D006635 ORTHO05D008047 1.9e-58 230.3 203 56.7
Duzib151G0047 Durio zibethinus HOM05D006635 ORTHO05D008047 2.4e-58 229.9 261 50.6
CARHR099010 Cardamine hirsuta HOM05D006635 ORTHO05D008047 7.0e-58 228.4 242 50.8
CDE04G0173 Ceratophyllum demersum HOM05D006635 ORTHO05D008047 1.6e-57 227.3 257 49.8
Phvul.007G125600 Phaseolus vulgaris HOM05D006635 ORTHO05D008047 5.0e-56 222.2 244 49.2
QL06p015844 Quercus lobata HOM05D006635 ORTHO05D008047 5.0e-56 222.2 345 41.2
Peaxi162Scf00325g00713 Petunia axillaris HOM05D006635 ORTHO05D008047 2.1e-54 216.9 268 47.4
Hund11856 Selenicereus undatus HOM05D006635 ORTHO05D008047 6.2e-54 215.3 268 46.6
CSS0031458 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 1.5e-52 210.7 287 46.7
BolC1t04048H Brassica oleracea HOM05D006635 ORTHO05D008047 4.4e-52 209.1 181 55.2
Aa31LG8G9580 Aethionema arabicum HOM05D006635 ORTHO05D008047 7.5e-52 208.4 233 50.2
Lsat_1_v5_gn_3_122920 Lactuca sativa HOM05D006635 ORTHO05D008047 2.9e-51 206.5 212 54.2
EL10Ac3g05891 Beta vulgaris HOM05D006635 ORTHO05D008047 1.9e-50 203.8 262 45.0
VMungo0720G1578 Vigna mungo HOM05D006635 ORTHO05D008047 1.9e-50 203.8 269 45.0
Thhalv10022194m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 1.6e-49 200.7 199 49.7
MBI19_g38372_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 5.2e-45 185.7 245 45.3
Sabra10G0032800 Salix brachista HOM05D006635 ORTHO05D008047 5.4e-42 175.6 435 31.0
PGR004G0922 Punica granatum HOM05D006635 ORTHO05D008047 1.3e-40 171.0 159 57.9
C01p40990 Brassica napus HOM05D006635 ORTHO05D008047 3.6e-38 162.9 140 52.9
PGR102G1543 Punica granatum HOM05D006635 ORTHO05D008047 9.9e-36 154.8 250 40.0
Mapoly0014s0074 Marchantia polymorpha HOM05D006635 ORTHO05D008047 1.3e-35 154.5 262 36.3
AagrBONN_evm.TU.Sc2ySwM_228.5661 Anthoceros agrestis HOM05D006635 ORTHO05D008047 6.6e-32 142.1 257 37.7
AUR62015462 Chenopodium quinoa HOM05D006635 ORTHO05D008047 9.0e-29 131.7 165 48.5
TAR636G2119 Trochodendron aralioides HOM05D006635 ORTHO05D008047 5.1e-24 115.9 99 55.6
Pp3c14_21160 Physcomitrium patens HOM05D006635 ORTHO05D008047 1.1e-21 108.2 185 34.1
Pp3c1_38430 Physcomitrium patens HOM05D006635 ORTHO05D008047 1.4e-21 107.8 235 31.1
PGR083G1020 Punica granatum HOM05D006635 ORTHO05D008047 1.4e-21 107.8 240 34.2
TPR.G27195 Trifolium pratense HOM05D006635 ORTHO05D008047 9.0e-21 105.1 98 49.0
TAR636G0517 Trochodendron aralioides HOM05D006635 ORTHO05D008047 2.6e-20 103.6 128 53.9
CBR_g33918 Chara braunii HOM05D006635 ORTHO05D008047 1.7e-19 100.9 181 35.9
SEGI_02340 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 6.0e-17 92.4 74 64.9
MBI19_g44428_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 6.7e-16 89.0 131 42.0
AT1G61410 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 1.1e-15 88.2 138 48.6
SEGI_11171 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 7.4e-15 85.5 75 50.7
Ciclev10029925m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.3e-14 84.7 140 35.0
C01p40960 Brassica napus HOM05D006635 ORTHO05D008047 2.4e-13 80.5 88 54.5
Oeu058884.1 Olea europaea HOM05D001680 ORTHO05D001596 2.6e-12 77.0 125 44.0
Thhalv10021924m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 1.9e-10 70.9 95 47.4
Pp3c10_9830 Physcomitrium patens HOM05D000160 ORTHO05D000496 8.7e-08 62.0 142 28.9
Pp3c3_5070 Physcomitrium patens HOM05D000160 ORTHO05D000496 1.1e-07 61.6 130 28.5
Pp3c13_7410 Physcomitrium patens HOM05D000160 ORTHO05D000496 4.3e-07 59.7 130 28.5


User provided reference genes

Program Settings