Gene: Pp3c1_38430

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c1_38430
  • Transcript Identifier Pp3c1_38430V3.5
  • Gene Type Coding gene
  • Location Chr01 : 26666007-26667947 : negative

Gene Family Information

  • ID HOM05D006635
  • #Genes/#Species 121/90
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c1_38430V3.5
  • pacid 32971516
  • alias Phypa_86560
  • alias Pp1s147_88V6
  • alias Phpat.001G153700
  • uniprot A0A2K1LBF8

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006302
IEA
GOA Databasedouble-strand break repair
GO:0006302
IEA
InterProdouble-strand break repair
GO:0006310
IEA
GOA DatabaseDNA recombination
GO:0006310
IEA
InterProDNA recombination
GO:0051103
IBA
GOA DatabaseDNA ligation involved in DNA repair
GO:0051351
IBA
GOA Databasepositive regulation of ligase activity
GO:0006303
IBA
GOA Databasedouble-strand break repair via nonhomologous end joining
GO:0010165
IBA
GOA Databaseresponse to X-ray

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G23100
GO:0008022
ISO
PLAZA Integrative Orthologyprotein C-terminus binding AT3G23100

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0032807
IBA
GOA DatabaseDNA ligase IV complex
GO:0005958
IBA
GOA DatabaseDNA-dependent protein kinase-DNA ligase 4 complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010585 DNA repair protein XRCC4
IPR014751 DNA repair protein XRCC4-like, C-terminal
Mapman id Description
14.4.3.2 DNA damage response.nonhomologous end-joining (NHEJ) repair.LIG4-XRCC4 ligase complex.component XRCC4