Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 0.0e+00 1361.7 691 100.0
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.2e-304 1048.5 691 75.0
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 7.9e-225 784.3 675 58.1
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 1.0e-224 783.9 675 57.8
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 1.8e-224 783.1 673 58.2
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 2.3e-224 782.7 675 58.2
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 3.9e-224 781.9 675 58.2
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 1.9e-223 779.6 672 57.7
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 2.5e-223 779.2 675 58.2
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.3e-223 778.9 673 57.9
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 5.7e-223 778.1 672 58.2
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 5.7e-223 778.1 675 58.4
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 2.8e-222 775.8 675 57.6
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 3.7e-222 775.4 675 58.1
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.4e-221 773.5 675 57.5
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.2e-220 770.4 673 57.5
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 5.9e-220 768.1 675 57.2
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 1.0e-219 767.3 673 56.6
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 1.0e-219 767.3 673 56.6
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 1.0e-219 767.3 673 56.6
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.3e-219 766.9 684 56.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.3e-219 766.9 671 57.7
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 2.9e-219 765.8 681 57.1
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 8.5e-219 764.2 683 56.8
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 3.2e-218 762.3 673 56.3
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 3.2e-218 762.3 675 56.9
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 4.2e-218 761.9 673 56.6
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 5.5e-218 761.5 668 56.7
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.6e-217 760.0 683 56.2
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 4.6e-217 758.4 683 56.1
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 7.9e-217 757.7 676 57.2
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 1.0e-216 757.3 676 56.5
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 1.3e-216 756.9 668 56.1
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.3e-216 756.9 683 55.9
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.3e-216 756.9 682 56.2
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 1.8e-216 756.5 673 56.3
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 1.8e-216 756.5 673 56.5
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 2.3e-216 756.1 675 55.9
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 2.3e-216 756.1 675 56.0
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 3.0e-216 755.7 675 56.3
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 3.9e-216 755.4 676 56.7
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 6.7e-216 754.6 673 56.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-215 753.1 682 56.3
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 3.3e-215 752.3 675 56.0
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 4.3e-215 751.9 693 55.1
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 4.3e-215 751.9 680 56.5
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 4.3e-215 751.9 675 55.9
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 9.7e-215 750.7 673 56.5
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 1.3e-214 750.4 693 54.8
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.3e-214 750.4 674 55.6
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 1.3e-214 750.4 675 55.6
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 6.3e-214 748.0 680 56.2
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 8.2e-214 747.7 675 55.4
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 8.2e-214 747.7 693 54.7
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 8.2e-214 747.7 675 55.4
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 1.8e-213 746.5 675 55.3
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 3.1e-213 745.7 699 54.9
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 4.1e-213 745.3 673 56.2
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 4.1e-213 745.3 713 54.4
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 5.3e-213 745.0 695 54.8
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 6.9e-213 744.6 686 55.5
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 1.2e-212 743.8 676 55.2
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 1.2e-212 743.8 690 54.6
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.5e-212 743.4 676 55.3
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 1.5e-212 743.4 682 55.3
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 2.6e-212 742.7 675 55.9
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 7.7e-212 741.1 673 55.7
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 7.7e-212 741.1 684 55.0
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.2e-211 739.6 675 55.1
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 3.8e-211 738.8 683 55.5
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 3.8e-211 738.8 675 54.8
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.1e-210 737.3 675 55.4
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 1.9e-210 736.5 676 55.6
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 3.2e-210 735.7 677 55.4
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 7.2e-210 734.6 675 54.1
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 9.4e-210 734.2 691 54.4
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 9.4e-210 734.2 677 54.8
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.2e-209 733.8 701 53.2
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 7.9e-209 731.1 719 52.2
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.3e-208 729.6 675 55.0
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 3.9e-208 728.8 683 54.9
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 3.9e-208 728.8 677 54.8
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 6.7e-208 728.0 702 53.7
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 2.0e-207 726.5 675 54.5
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 4.4e-207 725.3 748 51.1
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 5.7e-207 724.9 677 55.2
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 1.5e-204 716.8 692 53.2
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 3.4e-204 715.7 682 53.5
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 7.7e-204 714.5 694 52.6
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 6.5e-203 711.4 682 53.5
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.4e-202 710.3 694 51.6
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 4.2e-202 708.8 677 52.6
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 5.5e-202 708.4 649 54.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 7.2e-202 708.0 700 52.4
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.2e-201 707.2 673 53.2
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 1.6e-201 706.8 685 53.1
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.3e-199 699.1 694 53.2
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 7.4e-199 698.0 663 54.6
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 2.2e-198 696.4 672 53.0
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.0e-195 687.6 716 49.9
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.0e-192 676.0 583 56.8
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.2e-191 674.1 680 51.0
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.2e-191 674.1 680 51.0
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.8e-189 666.8 741 47.5
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 9.1e-189 664.5 588 56.3
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.5e-186 655.2 628 53.3
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 2.7e-185 652.9 691 48.9
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 3.6e-185 652.5 683 48.3
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 7.0e-181 638.3 598 53.7
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.2e-180 637.5 564 54.8
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 4.5e-180 635.6 674 48.2
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.5e-175 620.5 553 55.9
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 4.3e-170 602.4 583 51.8
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 3.6e-169 599.4 544 55.1
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 7.8e-164 581.6 674 48.1
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 8.3e-158 561.6 484 57.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.9e-150 535.8 466 56.9
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 7.1e-133 478.8 423 56.0
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.8e-123 447.6 445 53.0
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 4.3e-106 389.8 715 35.1
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.1e-104 383.3 328 55.5
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 3.9e-99 366.7 756 31.3
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 6.1e-84 316.2 280 55.7
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 5.2e-83 313.2 357 46.5
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 5.3e-80 303.1 745 29.9
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 9.1e-80 302.4 269 54.6
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.5e-77 294.3 269 55.8
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.5e-70 269.2 253 53.0
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.9e-69 268.1 246 54.1
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.8e-67 259.6 247 55.1
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.4e-66 257.3 237 54.9
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.8e-56 224.9 226 52.2
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.4e-50 203.8 181 54.1
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.7e-49 200.7 147 59.9
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 6.4e-49 199.9 186 54.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 8.9e-43 179.5 204 45.1
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 4.4e-42 177.2 155 51.0
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 3.3e-37 161.0 186 46.8
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.6e-36 158.7 488 26.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.1e-35 156.0 195 44.1
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.2e-32 144.4 162 48.1
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 5.4e-32 143.7 156 48.1
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 2.3e-30 138.3 167 49.1
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 6.6e-30 136.7 188 44.1
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.8e-28 131.3 109 60.6
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.2e-24 117.9 111 50.5
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.2e-23 115.9 114 55.3
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 2.1e-23 115.2 103 58.3
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.3e-21 107.5 119 52.1
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 9.9e-18 96.3 94 51.1
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 6.4e-17 93.6 63 65.1
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 9.3e-16 89.7 94 47.9
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 9.3e-16 89.7 94 47.9
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.6e-15 87.4 78 55.1
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 7.8e-15 86.7 59 64.4
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.7e-14 85.5 59 62.7
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.9e-13 82.0 57 61.4
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 6.2e-12 77.0 71 50.7
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 4.2e-08 64.3 139 29.5
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.7e-07 61.6 97 39.2
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 3.9e-06 57.8 40 62.5


User provided reference genes

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