Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb041950 Zea mays HOM05D001758 ORTHO05D443820 0.0e+00 1099.7 573 100.0
Zm00001eb124330 Zea mays HOM05D001758 ORTHO05D446603 1.9e-54 218.0 129 94.6
Atru.chr9.2154 Acer truncatum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Actinidia33743 Actinidia chinensis HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Aa31LG6G6650 Aethionema arabicum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Aa31LG9G10850 Aethionema arabicum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Ah.07g196400 Amaranthus hybridus HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
ATR0329G044 Amborella trichopoda HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Aqoxy5G01113 Aquilegia oxysepala HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
AL6G45790 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
AL7G30000 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
AT4G11380 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
AT4G23460 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
arahy.Tifrunner.gnm1.ann1.AY0C6D Arachis hypogaea HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
arahy.Tifrunner.gnm1.ann1.KK02P6 Arachis hypogaea HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
MSTRG.1854 Avicennia marina HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
EL10Ac5g12803 Beta vulgaris HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
BcaNung04480 Brassica carinata HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
A03p54320 Brassica napus HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
C07p52720 Brassica napus HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
BolC7t45772H Brassica oleracea HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
BraA03t14494Z Brassica rapa HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CSS0009285 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CSS0019297 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CSS0038252 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CSS0042527 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CANSAT21G2030 Cannabis sativa HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Carub.0006s3029 Capsella rubella HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Carub.0007s1765 Capsella rubella HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CAN.G532.6 Capsicum annuum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CARHR255190 Cardamine hirsuta HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Cpa.g.sc180.11 Carica papaya HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Cfa012203 Carpinus fangiana HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CiPaw.12G091200 Carya illinoinensis HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CDE02G4367 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CDE08G1656 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
AUR62027253 Chenopodium quinoa HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
ClCG01G002530 Citrullus lanatus HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
ClCG02G002170 Citrullus lanatus HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Ciclev10018786m.g Citrus clementina HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Cc08_g15000 Coffea canephora HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Haze_08813 Corylus avellana HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
MELO3C005693.2 Cucumis melo HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
MELO3C018841.2 Cucumis melo HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CsaV3_5G002640 Cucumis sativus L. HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
CsaV3_7G003330 Cucumis sativus L. HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Dinv38922 Davidia involucrata HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Duzib084G0730 Durio zibethinus HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Duzib205G0508 Durio zibethinus HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
ECA233G5934 Erigeron canadensis HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
ECA240G1636 Erigeron canadensis HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Migut.E01190 Erythranthe guttata HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Eucgr.D01829 Eucalyptus grandis HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Thhalv10024360m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Thhalv10028407m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Glyma.01G227000 Glycine max HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Glyma.11G015700 Glycine max HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Gohir.A03G019300 Gossypium hirsutum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Gohir.D03G149700 Gossypium hirsutum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Gorai.003G157000 Gossypium raimondii HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
HanXRQChr13g0394171 Helianthus annuus HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
HanXRQChr13g0416041 Helianthus annuus HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Lsat_1_v5_gn_6_5441 Lactuca sativa HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Lsat_1_v5_gn_6_86320 Lactuca sativa HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Lj8A218T22 Lonicera japonica HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
MBI07_g21076_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Manes.02G136100 Manihot esculenta HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Medtr4g076210 Medicago truncatula HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Nn5g30834 Nelumbo nucifera HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Nn6g31920 Nelumbo nucifera HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Nitab4.5_0001522g0060 Nicotiana tabacum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Nitab4.5_0002975g0020 Nicotiana tabacum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Oeu042339.1 Olea europaea HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Os03g0355600 Oryza sativa ssp. japonica HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
PSO541G5667 Papaver somniferum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
PSO675G0536 Papaver somniferum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Peaxi162Scf00074g02036 Petunia axillaris HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Psat7g179680 Pisum sativum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Potri.001G101400 Populus trichocarpa HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Potri.003G130400 Populus trichocarpa HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
QL12p032420 Quercus lobata HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Rhsim07G0088700 Rhododendron simsii HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Sabra01G0076400 Salix brachista HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Sabra03G0092700 Salix brachista HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
SalBow1G0547 Salvia bowleyana HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Sp6g06070 Schrenkiella parvula HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Sp7g21360 Schrenkiella parvula HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Sed0001016 Sechium edule HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Hund14840 Selenicereus undatus HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
SEGI_36929 Sequoiadendron giganteum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Sc01g0009710 Simmondsia chinensis HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Solyc08g081320.3 Solanum lycopersicum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Sopen08g029630 Solanum pennellii HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
PGSC0003DMG400012194 Solanum tuberosum HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
THA.LOC104806416 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
THA.LOC104813023 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
THA.LOC104814663 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Thecc.03G282700 Theobroma cacao HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
TPR.G22570 Trifolium pratense HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
TWI60G1699 Tripterygium wilfordii HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
TAR381G1011 Trochodendron aralioides HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
vmacro13195 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
HPP92_008911 Vanilla planifolia HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
VMungo1215G2939 Vigna mungo HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
GSVIVG01019391001 Vitis vinifera HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Zm00001eb017130 Zea mays HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Zm00001eb394540 Zea mays HOM05D001758 ORTHO05D004430 4.5e-32 143.7 77 98.7
Actinidia14582 Actinidia chinensis HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
BcaB01g01638 Brassica carinata HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
BcaC04g21134 Brassica carinata HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
A09p27770 Brassica napus HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
C09p35180 Brassica napus HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
BolC9t56364H Brassica oleracea HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
BraA09t38347Z Brassica rapa HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
DCAR_008367 Daucus carota HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
FvH4_5g02830 Fragaria vesca HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
FAN08G0671 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
FAN13G1114 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
FAN18G3406 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
Glyma.12G021600 Glycine max HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
Lalb_Chr05g0211451 Lupinus albus HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
Lalb_Chr16g0376841 Lupinus albus HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
MD06G1087800 Malus domestica HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
MD14G1108600 Malus domestica HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
Oeu007743.2 Olea europaea HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
Phvul.011G078200 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
Prupe.5G103900 Prunus persica HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
RcHm_v2.0_Chr7g0197091 Rosa chinensis HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
SHI07182 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-31 142.5 77 97.4
Sed0023378 Sechium edule HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
SGA_v2.0_scaffold144G35913 Striga asiatica HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
SGA_v2.0_scaffold48G18078 Striga asiatica HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
TAR625G0205 Trochodendron aralioides HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
VMungo1127G1185 Vigna mungo HOM05D001758 ORTHO05D004430 1.0e-31 142.5 77 97.4
FAN04G0007 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.3e-31 142.1 77 96.1
Lsat_1_v5_gn_3_6140 Lactuca sativa HOM05D001758 ORTHO05D004430 1.3e-31 142.1 77 97.4
Lj3g0022998 Lotus japonicus HOM05D001758 ORTHO05D004430 1.3e-31 142.1 77 97.4
Oeu011033.1 Olea europaea HOM05D001758 ORTHO05D004430 1.3e-31 142.1 77 97.4
DCAR_005564 Daucus carota HOM05D001758 ORTHO05D004430 2.2e-31 141.4 77 96.1
unitig_62.g23539 Utricularia gibba HOM05D001758 ORTHO05D004430 2.2e-31 141.4 77 97.4
vmacro13146 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 2.9e-31 141.0 76 98.7
Phvul.002G034100 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 3.8e-31 140.6 77 97.4
AagrBONN_evm.TU.Sc2ySwM_117.2557 Anthoceros agrestis HOM05D001758 ORTHO05D004430 5.0e-31 140.2 77 96.1
CBR_g10902 Chara braunii HOM05D001758 ORTHO05D004430 5.0e-31 140.2 77 94.8
MBI10_g48303_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 8.5e-31 139.4 77 94.8
SMO298G0016 Selaginella moellendorffii HOM05D001758 ORTHO05D004430 8.5e-31 139.4 77 93.5
Gohir.D08G202500 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.1e-30 139.0 77 94.8
Gorai.004G213900 Gossypium raimondii HOM05D001758 ORTHO05D004430 1.1e-30 139.0 77 94.8
Mapoly0002s0295 Marchantia polymorpha HOM05D001758 ORTHO05D004430 1.1e-30 139.0 77 94.8
Pp3c1_19340 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.1e-30 139.0 77 94.8
Pp3c2_18140 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.4e-30 138.7 77 93.5
Gohir.A08G184000 Gossypium hirsutum HOM05D001758 ORTHO05D004430 4.2e-30 137.1 77 93.5
Pp3c14_2460 Physcomitrium patens HOM05D001758 ORTHO05D004430 7.2e-30 136.3 77 90.9
Eucgr.G00898 Eucalyptus grandis HOM05D001758 ORTHO05D023347 9.4e-30 136.0 77 94.8
PRCOL_00003609 Prasinoderma coloniale HOM05D001758 ORTHO05D004430 1.5e-27 128.6 77 85.7
Cre11.g478156 Chlamydomonas reinhardtii HOM05D001758 ORTHO05D004430 8.2e-26 122.9 83 75.9
Actinidia27374 Actinidia chinensis HOM05D001758 ORTHO05D004430 3.4e-24 117.5 64 98.4
MCO01G139 Micromonas commoda HOM05D001758 ORTHO05D004430 1.0e-23 115.9 77 74.0
Cfa024790 Carpinus fangiana HOM05D001758 ORTHO05D004430 7.9e-21 106.3 77 67.5
Cfa025216 Carpinus fangiana HOM05D001758 ORTHO05D004430 3.1e-17 94.4 77 61.0
AUR62010715 Chenopodium quinoa HOM05D001758 ORTHO05D004430 1.3e-07 62.4 38 86.8


User provided reference genes

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