Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb035120 Zea mays HOM05D000228 ORTHO05D006129 4.2e-49 197.6 93 100.0
Zm00001eb035130 Zea mays HOM05D000228 ORTHO05D006129 4.2e-49 197.6 93 100.0
Os04g0572600 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 2.1e-32 142.1 88 73.9
Os09g0555200 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 8.1e-32 140.2 90 71.1
Eucgr.D01929 Eucalyptus grandis HOM05D000228 ORTHO05D006129 1.4e-20 102.8 82 53.7
TAR636G0238 Trochodendron aralioides HOM05D000228 ORTHO05D006129 3.2e-20 101.7 91 51.6
CSS0022136 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D006129 5.4e-20 100.9 82 56.1
MD04G1068800 Malus domestica HOM05D000228 ORTHO05D006129 7.1e-20 100.5 94 48.9
Sed0014462 Sechium edule HOM05D000228 ORTHO05D006129 7.1e-20 100.5 90 54.4
Nn6g34281 Nelumbo nucifera HOM05D000228 ORTHO05D006129 2.1e-19 99.0 85 48.2
MBI12_g02094_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D006129 6.0e-19 97.4 95 46.3
Oeu062351.1 Olea europaea HOM05D000228 ORTHO05D006129 6.0e-19 97.4 82 51.2
MELO3C014034.2 Cucumis melo HOM05D000228 ORTHO05D006129 7.8e-19 97.1 81 54.3
CsaV3_3G003630 Cucumis sativus L. HOM05D000228 ORTHO05D006129 7.8e-19 97.1 81 54.3
Dinv39017 Davidia involucrata HOM05D000228 ORTHO05D006129 7.8e-19 97.1 81 53.1
ClCG10G003630 Citrullus lanatus HOM05D000228 ORTHO05D006129 1.0e-18 96.7 81 54.3
vmacro14006 Vaccinium macrocarpon HOM05D000228 ORTHO05D006129 2.3e-18 95.5 82 52.4
Rhsim07G0095300 Rhododendron simsii HOM05D000228 ORTHO05D006129 3.9e-18 94.7 82 52.4
Cfa012094 Carpinus fangiana HOM05D000228 ORTHO05D006129 5.1e-18 94.4 88 50.0
Gohir.A08G178200 Gossypium hirsutum HOM05D000228 ORTHO05D006129 5.1e-18 94.4 82 51.2
Haze_08958 Corylus avellana HOM05D000228 ORTHO05D006129 6.6e-18 94.0 88 48.9
Gohir.D08G196600 Gossypium hirsutum HOM05D000228 ORTHO05D006129 6.6e-18 94.0 81 51.9
Gorai.004G207300 Gossypium raimondii HOM05D000228 ORTHO05D006129 6.6e-18 94.0 81 51.9
Dinv37697 Davidia involucrata HOM05D000228 ORTHO05D006129 8.6e-18 93.6 82 51.2
FAN04G1469 Fragaria x ananassa HOM05D000228 ORTHO05D006129 8.6e-18 93.6 81 46.9
FAN08G3600 Fragaria x ananassa HOM05D000228 ORTHO05D006129 8.6e-18 93.6 81 46.9
FAN13G2476 Fragaria x ananassa HOM05D000228 ORTHO05D006129 8.6e-18 93.6 81 46.9
Lj8C239G8 Lonicera japonica HOM05D000228 ORTHO05D006129 8.6e-18 93.6 81 53.1
unitig_22.g5477 Utricularia gibba HOM05D000228 ORTHO05D006129 8.6e-18 93.6 83 50.6
FvH4_5g01400 Fragaria vesca HOM05D000228 ORTHO05D006129 1.1e-17 93.2 81 46.9
Prupe.5G089300 Prunus persica HOM05D000228 ORTHO05D006129 1.1e-17 93.2 82 50.0
TWI15G0190 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 1.1e-17 93.2 93 46.2
Aqoxy1G00844 Aquilegia oxysepala HOM05D000228 ORTHO05D006129 1.5e-17 92.8 77 46.8
CAN.G981.44 Capsicum annuum HOM05D000228 ORTHO05D006129 1.5e-17 92.8 82 51.2
FAN18G2520 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.5e-17 92.8 81 46.9
Peaxi162Scf00620g00924 Petunia axillaris HOM05D000228 ORTHO05D006129 1.9e-17 92.4 90 47.8
MSTRG.25571 Avicennia marina HOM05D000228 ORTHO05D006129 2.5e-17 92.0 82 51.2
MD06G1069800 Malus domestica HOM05D000228 ORTHO05D006129 2.5e-17 92.0 92 47.8
Lj2A197T62 Lonicera japonica HOM05D000228 ORTHO05D006129 3.3e-17 91.7 82 48.8
Thecc.03G270300 Theobroma cacao HOM05D000228 ORTHO05D006129 3.3e-17 91.7 81 50.6
TWI60G0610 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 3.3e-17 91.7 93 44.1
Psat2g181400 Pisum sativum HOM05D000228 ORTHO05D006129 4.3e-17 91.3 89 42.7
PGR031G2544 Punica granatum HOM05D000228 ORTHO05D006129 4.3e-17 91.3 81 51.9
GSVIVG01019869001 Vitis vinifera HOM05D000228 ORTHO05D006129 4.3e-17 91.3 82 50.0
CiPaw.12G099200 Carya illinoinensis HOM05D000228 ORTHO05D006129 5.6e-17 90.9 85 50.6
Oeu036777.1 Olea europaea HOM05D000228 ORTHO05D002228 5.6e-17 90.9 77 49.4
Migut.A00916 Erythranthe guttata HOM05D000228 ORTHO05D006129 7.3e-17 90.5 82 48.8
Cc08_g13910 Coffea canephora HOM05D000228 ORTHO05D006129 9.6e-17 90.1 81 46.9
RcHm_v2.0_Chr7g0199481 Rosa chinensis HOM05D000228 ORTHO05D006129 9.6e-17 90.1 81 45.7
Nitab4.5_0001714g0190 Nicotiana tabacum HOM05D000228 ORTHO05D006129 1.2e-16 89.7 90 47.8
Nitab4.5_0007891g0030 Nicotiana tabacum HOM05D000228 ORTHO05D006129 1.2e-16 89.7 90 47.8
TPR.G6660 Trifolium pratense HOM05D000228 ORTHO05D006129 1.2e-16 89.7 82 43.9
Ca_06663_v3 Cicer arietinum L. HOM05D000228 ORTHO05D006129 2.1e-16 89.0 89 41.6
Manes.02G028200 Manihot esculenta HOM05D000228 ORTHO05D006129 3.6e-16 88.2 82 48.8
THA.LOC104809424 Tarenaya hassleriana HOM05D000228 ORTHO05D006129 4.7e-16 87.8 81 49.4
Glyma.11G026700 Glycine max HOM05D000228 ORTHO05D006129 6.2e-16 87.4 89 39.3
Glyma.01G215700 Glycine max HOM05D000228 ORTHO05D006129 8.1e-16 87.0 89 38.2
VMungo1215G3193 Vigna mungo HOM05D000228 ORTHO05D006129 8.1e-16 87.0 89 40.4
Atru.chr9.1533 Acer truncatum HOM05D000228 ORTHO05D006129 1.1e-15 86.7 81 49.4
HanXRQChr06g0165071 Helianthus annuus HOM05D000228 ORTHO05D006129 1.4e-15 86.3 81 49.4
Sopen08g028570 Solanum pennellii HOM05D000228 ORTHO05D006129 1.4e-15 86.3 83 49.4
QL05p069269 Quercus lobata HOM05D000228 ORTHO05D006129 1.8e-15 85.9 85 49.4
Lalb_Chr05g0225121 Lupinus albus HOM05D000228 ORTHO05D006129 2.4e-15 85.5 93 41.9
Phvul.002G153700 Phaseolus vulgaris HOM05D000228 ORTHO05D006129 2.4e-15 85.5 89 38.2
ClCG00G000380 Citrullus lanatus HOM05D000228 ORTHO05D006129 3.1e-15 85.1 100 44.0
Sabra01G0084800 Salix brachista HOM05D000228 ORTHO05D006129 3.1e-15 85.1 91 42.9
Ciclev10018489m.g Citrus clementina HOM05D000228 ORTHO05D006129 5.2e-15 84.3 82 43.9
Potri.001G111300 Populus trichocarpa HOM05D000228 ORTHO05D006129 5.2e-15 84.3 82 46.3
CANSAT21G2272 Cannabis sativa HOM05D000228 ORTHO05D006129 6.8e-15 84.0 81 45.7
Carub.0002s0198 Capsella rubella HOM05D000228 ORTHO05D006129 6.8e-15 84.0 93 44.1
Aa31LG2G520 Aethionema arabicum HOM05D000228 ORTHO05D006129 8.9e-15 83.6 91 44.0
DCAR_008426 Daucus carota HOM05D000228 ORTHO05D006129 8.9e-15 83.6 82 45.1
A03p68370 Brassica napus HOM05D000228 ORTHO05D006129 1.2e-14 83.2 93 44.1
COL.COLO4_05280 Corchorus olitorius HOM05D000228 ORTHO05D006129 1.2e-14 83.2 93 44.1
Gohir.D11G020833 Gossypium hirsutum HOM05D000228 ORTHO05D002228 1.5e-14 82.8 88 42.0
Gohir.D11G020900 Gossypium hirsutum HOM05D000228 ORTHO05D006129 1.5e-14 82.8 88 42.0
Gorai.007G022200 Gossypium raimondii HOM05D000228 ORTHO05D006129 1.5e-14 82.8 88 42.0
BcaC02g10404 Brassica carinata HOM05D000228 ORTHO05D006129 2.0e-14 82.4 93 44.1
C04p29320 Brassica napus HOM05D000228 ORTHO05D006129 2.0e-14 82.4 93 44.1
BolC4t24462H Brassica oleracea HOM05D000228 ORTHO05D006129 2.0e-14 82.4 93 44.1
TPR.G33163 Trifolium pratense HOM05D000228 ORTHO05D006129 2.0e-14 82.4 82 40.2
Ah.12g057750 Amaranthus hybridus HOM05D000228 ORTHO05D006129 2.6e-14 82.0 91 41.8
BraA01t02634Z Brassica rapa HOM05D000228 ORTHO05D006129 3.4e-14 81.6 93 43.0
Medtr5g011000 Medicago truncatula HOM05D000228 ORTHO05D006129 3.4e-14 81.6 82 41.5
BcaC04g22731 Brassica carinata HOM05D000228 ORTHO05D006129 4.4e-14 81.3 93 44.1
A09p13380 Brassica napus HOM05D000228 ORTHO05D006129 4.4e-14 81.3 93 44.1
C09p15860 Brassica napus HOM05D000228 ORTHO05D006129 4.4e-14 81.3 93 44.1
BolC9t54499H Brassica oleracea HOM05D000228 ORTHO05D006129 4.4e-14 81.3 93 44.1
BraA09t36984Z Brassica rapa HOM05D000228 ORTHO05D006129 4.4e-14 81.3 93 44.1
Thhalv10023214m.g Eutrema salsugineum HOM05D000228 ORTHO05D006129 4.4e-14 81.3 91 44.0
Lsat_1_v5_gn_3_5900 Lactuca sativa HOM05D000228 ORTHO05D006129 4.4e-14 81.3 81 48.1
BcaC06g31930 Brassica carinata HOM05D000228 ORTHO05D006129 5.8e-14 80.9 93 44.1
PSO478G3868 Papaver somniferum HOM05D000228 ORTHO05D006129 7.6e-14 80.5 91 41.8
PSO782G2782 Papaver somniferum HOM05D000228 ORTHO05D006129 7.6e-14 80.5 91 42.9
Sp2g01560 Schrenkiella parvula HOM05D000228 ORTHO05D006129 7.6e-14 80.5 91 45.1
arahy.Tifrunner.gnm1.ann1.RU3ERW Arachis hypogaea HOM05D000228 ORTHO05D006129 9.9e-14 80.1 89 39.3
arahy.Tifrunner.gnm1.ann1.WX3P41 Arachis hypogaea HOM05D000228 ORTHO05D006129 9.9e-14 80.1 89 39.3
CARHR048620 Cardamine hirsuta HOM05D000228 ORTHO05D006129 9.9e-14 80.1 93 41.9
PGSC0003DMG400022753 Solanum tuberosum HOM05D000228 ORTHO05D006129 9.9e-14 80.1 83 47.0
Lj2g0010994 Lotus japonicus HOM05D000228 ORTHO05D006129 1.7e-13 79.3 81 38.3
ECA246G3981 Erigeron canadensis HOM05D000228 ORTHO05D006129 2.2e-13 79.0 82 46.3
Lalb_Chr09g0324731 Lupinus albus HOM05D000228 ORTHO05D006129 6.4e-13 77.4 89 38.2
Lalb_Chr05g0214761 Lupinus albus HOM05D000228 ORTHO05D006129 1.1e-12 76.6 89 37.1
DCAR_006765 Daucus carota HOM05D000228 ORTHO05D006129 1.4e-12 76.3 82 42.7
EL10Ac5g12720 Beta vulgaris HOM05D000228 ORTHO05D006129 7.1e-12 73.9 81 44.4
AUR62017303 Chenopodium quinoa HOM05D000228 ORTHO05D002228 9.3e-12 73.6 77 45.5
AUR62010662 Chenopodium quinoa HOM05D000228 ORTHO05D006129 1.6e-11 72.8 81 43.2
AT1G63020 Arabidopsis thaliana HOM05D000228 ORTHO05D006129 4.6e-11 71.2 93 37.6
AL2G12580 Arabidopsis lyrata HOM05D000228 ORTHO05D006129 1.7e-10 69.3 93 36.6
Mapoly0006s0043 Marchantia polymorpha HOM05D000228 ORTHO05D006129 2.5e-09 65.5 71 40.8
arahy.Tifrunner.gnm1.ann1.DV8NSN Arachis hypogaea HOM05D003700 ORTHO05D004160 7.3e-09 63.9 92 37.0
Mapoly0004s0120 Marchantia polymorpha HOM05D000228 ORTHO05D006129 9.6e-09 63.5 71 40.8
Pp3c10_23800 Physcomitrium patens HOM05D000228 ORTHO05D002228 9.6e-09 63.5 69 42.0
SMO361G0394 Selaginella moellendorffii HOM05D000228 ORTHO05D002228 6.2e-08 60.8 66 42.4
ClCG00G004750 Citrullus lanatus HOM05D000228 ORTHO05D006129 1.1e-07 60.1 42 54.8
arahy.Tifrunner.gnm1.ann1.L6WE06 Arachis hypogaea HOM05D003700 ORTHO05D004160 3.1e-07 58.5 93 37.6
PSO541G1766 Papaver somniferum HOM05D000228 ORTHO05D002228 3.1e-07 58.5 72 36.1
PSO675G4588 Papaver somniferum HOM05D000228 ORTHO05D002228 3.1e-07 58.5 72 36.1
Psat5g193120 Pisum sativum HOM05D003700 ORTHO05D004160 4.0e-07 58.2 81 40.7
Solyc03g116020.3 Solanum lycopersicum HOM05D003700 ORTHO05D004160 4.0e-07 58.2 82 39.0
HanXRQChr16g0508131 Helianthus annuus HOM05D000228 ORTHO05D002228 5.3e-07 57.8 62 37.1
Medtr3g435580 Medicago truncatula HOM05D003700 ORTHO05D004160 5.3e-07 57.8 81 39.5
SGA_v2.0_scaffold28G11775 Striga asiatica HOM05D000228 ORTHO05D002228 6.9e-07 57.4 62 40.3
Phvul.009G065400 Phaseolus vulgaris HOM05D000228 ORTHO05D002228 9.0e-07 57.0 62 40.3
Pp3c26_13480 Physcomitrium patens HOM05D000228 ORTHO05D002228 9.0e-07 57.0 70 35.7
SMO137G0241 Selaginella moellendorffii HOM05D000228 ORTHO05D006129 9.0e-07 57.0 62 40.3
CANSAT56G3341 Cannabis sativa HOM05D003700 ORTHO05D004160 1.2e-06 56.6 72 38.9
Glyma.04G039200 Glycine max HOM05D000228 ORTHO05D002228 1.2e-06 56.6 63 41.3
Nitab4.5_0006000g0030 Nicotiana tabacum HOM05D003700 ORTHO05D004160 1.2e-06 56.6 82 37.8
TPR.G11909 Trifolium pratense HOM05D003700 ORTHO05D004160 1.2e-06 56.6 81 38.3
Nitab4.5_0001128g0150 Nicotiana tabacum HOM05D003700 ORTHO05D004160 1.5e-06 56.2 82 37.8
SEGI_41222 Sequoiadendron giganteum HOM05D003700 ORTHO05D004160 1.5e-06 56.2 81 38.3
Sopen03g035010 Solanum pennellii HOM05D003700 ORTHO05D004160 1.5e-06 56.2 82 37.8
VMungo1309G0667 Vigna mungo HOM05D000228 ORTHO05D002228 1.5e-06 56.2 62 40.3
CAN.G837.20 Capsicum annuum HOM05D003700 ORTHO05D004160 2.0e-06 55.8 92 34.8
Medtr3g101770 Medicago truncatula HOM05D000228 ORTHO05D002228 2.0e-06 55.8 62 37.1
Sabra13G0024600 Salix brachista HOM05D003700 ORTHO05D004160 2.0e-06 55.8 73 37.0
SalBow7G4292 Salvia bowleyana HOM05D000228 ORTHO05D002228 2.0e-06 55.8 62 40.3
ECA247G0346 Erigeron canadensis HOM05D003700 ORTHO05D004160 2.6e-06 55.5 72 38.9
Lalb_Chr08g0235721 Lupinus albus HOM05D003700 ORTHO05D004160 2.6e-06 55.5 72 38.9
SMO278G0021 Selaginella moellendorffii HOM05D000228 ORTHO05D002228 2.6e-06 55.5 60 40.0
unitig_62.g23549 Utricularia gibba HOM05D003700 ORTHO05D004160 2.6e-06 55.5 73 39.7
Glyma.06G040300 Glycine max HOM05D000228 ORTHO05D002228 3.4e-06 55.1 62 40.3
Lj1g0000196 Lotus japonicus HOM05D003700 ORTHO05D004160 3.4e-06 55.1 72 38.9
Phvul.009G187000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 3.4e-06 55.1 72 38.9
PGSC0003DMG400019531 Solanum tuberosum HOM05D003700 ORTHO05D004160 3.4e-06 55.1 82 37.8
ECA236G1643 Erigeron canadensis HOM05D000228 ORTHO05D002228 4.4e-06 54.7 92 28.3
Os09g0112400 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D002228 4.4e-06 54.7 70 34.3
TWI81G0244 Tripterygium wilfordii HOM05D003700 ORTHO05D004160 4.4e-06 54.7 73 34.2
Eucgr.B00508 Eucalyptus grandis HOM05D003700 ORTHO05D004160 5.8e-06 54.3 72 36.1
Pp3c15_5270 Physcomitrium patens HOM05D000228 ORTHO05D006129 5.8e-06 54.3 83 30.1
Solyc04g078850.4 Solanum lycopersicum HOM05D000228 ORTHO05D002228 5.8e-06 54.3 63 39.7
arahy.Tifrunner.gnm1.ann1.N073K6 Arachis hypogaea HOM05D003700 ORTHO05D004160 7.6e-06 53.9 55 47.3
DCAR_021520 Daucus carota HOM05D003700 ORTHO05D004160 7.6e-06 53.9 72 38.9
Aqoxy3G03389 Aquilegia oxysepala HOM05D003700 ORTHO05D004160 9.9e-06 53.5 69 37.7
CANSAT01G0429 Cannabis sativa HOM05D000228 ORTHO05D002228 9.9e-06 53.5 72 31.9
CDE11G1137 Ceratophyllum demersum HOM05D000228 ORTHO05D006129 9.9e-06 53.5 42 52.4
Manes.06G092100 Manihot esculenta HOM05D003700 ORTHO05D004160 9.9e-06 53.5 72 37.5
HPP92_016720 Vanilla planifolia HOM05D000228 ORTHO05D002228 9.9e-06 53.5 62 37.1


User provided reference genes

Program Settings