Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 5.4e-305 1050.8 820 100.0
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 3.5e-78 297.4 527 78.2
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 2.3e-74 284.6 542 76.4
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 5.2e-74 283.5 544 75.9
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 6.8e-74 283.1 555 75.1
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 2.0e-73 281.6 542 76.0
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 4.4e-73 280.4 529 77.7
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 4.4e-73 280.4 532 75.0
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 4.4e-73 280.4 522 77.6
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 4.4e-73 280.4 522 77.6
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 5.7e-73 280.0 532 75.8
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 4.9e-72 276.9 520 77.9
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 8.3e-72 276.2 532 75.4
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 8.3e-72 276.2 534 76.6
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 1.4e-71 275.4 531 75.5
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 2.4e-71 274.6 531 75.5
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 3.1e-71 274.2 549 75.6
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 4.1e-71 273.9 528 77.1
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 4.1e-71 273.9 564 73.9
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 5.4e-71 273.5 551 74.0
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 9.2e-71 272.7 163 81.0
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.2e-70 272.3 571 73.4
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.6e-70 271.9 536 74.3
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 1.6e-70 271.9 571 73.4
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 1.6e-70 271.9 531 76.6
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 1.6e-70 271.9 544 75.0
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 2.7e-70 271.2 531 75.3
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 3.5e-70 270.8 517 78.1
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 5.9e-70 270.0 559 73.5
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 7.8e-70 269.6 518 78.4
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 7.8e-70 269.6 512 76.8
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 1.3e-69 268.9 513 77.0
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 1.7e-69 268.5 512 78.3
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 1.7e-69 268.5 525 76.0
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 1.7e-69 268.5 520 77.5
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 1.7e-69 268.5 535 75.0
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 1.7e-69 268.5 515 78.4
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 2.3e-69 268.1 543 75.3
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 2.3e-69 268.1 538 75.7
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 3.9e-69 267.3 522 76.8
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 5.0e-69 266.9 535 74.4
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 8.6e-69 266.2 523 76.9
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 1.5e-68 265.4 527 74.6
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 2.5e-68 264.6 532 75.9
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 2.5e-68 264.6 536 75.0
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 4.3e-68 263.8 519 77.5
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 4.3e-68 263.8 561 62.9
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 1.2e-67 262.3 533 74.1
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 1.2e-67 262.3 539 75.0
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 1.6e-67 261.9 540 74.8
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 1.6e-67 261.9 532 75.8
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 2.8e-67 261.2 549 71.9
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 3.6e-67 260.8 544 74.1
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 6.1e-67 260.0 541 75.6
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 6.1e-67 260.0 538 74.7
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 1.0e-66 259.2 538 74.2
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 1.8e-66 258.5 520 76.5
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.0e-66 257.3 573 55.1
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 6.8e-66 256.5 541 75.4
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 6.8e-66 256.5 525 73.9
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 1.2e-65 255.8 522 75.9
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 1.5e-65 255.4 540 73.5
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 1.5e-65 255.4 540 73.9
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 3.4e-65 254.2 522 75.7
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 3.4e-65 254.2 531 73.6
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 3.4e-65 254.2 534 73.8
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 3.4e-65 254.2 511 76.9
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 3.4e-65 254.2 527 75.0
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 3.4e-65 254.2 549 72.1
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 1.3e-64 252.3 534 74.0
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 1.7e-64 251.9 533 74.3
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 2.2e-64 251.5 534 74.0
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 3.7e-64 250.8 532 74.1
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 4.9e-64 250.4 531 74.4
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 6.4e-64 250.0 531 74.4
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 1.1e-63 249.2 531 74.8
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 3.2e-63 247.7 532 74.2
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 3.2e-63 247.7 517 76.0
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 4.1e-63 247.3 532 73.3
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 7.0e-63 246.5 536 72.9
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 9.2e-63 246.1 535 73.1
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 9.2e-63 246.1 535 73.1
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 9.2e-63 246.1 517 74.7
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 2.7e-62 244.6 540 37.4
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 4.6e-62 243.8 515 75.5
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 4.6e-62 243.8 583 43.6
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 7.8e-62 243.0 515 75.7
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 3.0e-61 241.1 507 76.7
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 1.1e-58 232.6 543 72.2
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 2.0e-57 228.4 474 80.0
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 1.0e-53 216.1 591 62.4
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 1.1e-52 212.6 550 56.2
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 4.4e-49 200.7 164 57.9
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.3e-48 199.1 535 66.2
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 3.7e-48 197.6 140 65.7
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 2.7e-46 191.4 146 63.0
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 3.5e-46 191.0 149 60.4
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 7.8e-46 189.9 140 65.7
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 2.1e-38 165.2 481 72.8
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 6.9e-34 150.2 118 59.3
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 1.4e-31 142.5 195 57.4
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 2.4e-31 141.7 102 64.7
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 7.8e-30 136.7 129 52.7
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 1.1e-28 132.9 137 48.2
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.1e-27 128.6 210 44.3
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 2.1e-27 128.6 110 55.5
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 9.0e-26 123.2 110 55.5
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 4.5e-25 120.9 83 69.9
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 4.9e-24 117.5 83 67.5
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 5.6e-20 104.0 129 41.1
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 9.0e-18 96.7 108 47.2
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 6.0e-14 84.0 117 44.4
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 2.3e-13 82.0 94 42.6
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 1.1e-12 79.7 146 32.9
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 6.9e-10 70.5 74 85.1
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 1.9e-07 62.4 61 47.5
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 7.1e-07 60.5 129 31.0


User provided reference genes

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