Gene: Pp3c1_20310

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c1_20310
  • Transcript Identifier Pp3c1_20310V3.1
  • Gene Type Coding gene
  • Location Chr01 : 15347080-15351331 : positive

Gene Family Information

  • ID HOM05D006900
  • #Genes/#Species 117/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c1_20310V3.1
  • pacid 32969281
  • alias Phpat.001G075500
  • alias Phypa_123190
  • alias Pp1s43_234V6
  • uniprot A0A2K1L8U1

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IBA
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0010114
ISO
PLAZA Integrative Orthologyresponse to red light AT3G17040
GO:0009657
ISO
PLAZA Integrative Orthologyplastid organization AT3G17040
GO:1901918
ISO
PLAZA Integrative Orthologynegative regulation of exoribonuclease activity AT3G17040
GO:0006417
IBA
GOA Databaseregulation of translation
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT3G17040
GO:0003727
IBA
GOA Databasesingle-stranded RNA binding
GO:0003729
IEA
GOA DatabasemRNA binding
GO:0003729
IEA
InterPromRNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT3G17040
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT3G17040
GO:0031969
ISO
PLAZA Integrative Orthologychloroplast membrane AT3G17040
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G17040
GO:0009507
IBA
GOA Databasechloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044624 Tetratricopeptide-like repeat protein Mbb1-like
IPR019734 Tetratricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR003107 HAT (Half-A-TPR) repeat
Mapman id Description
16.11.5.5 RNA processing.organelle machinery.post-transcriptional gene expression regulation.plastidial transcript stability factor (HCF107)