Gene: AT3G17040

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G17040
  • Transcript Identifier AT3G17040.3
  • Gene Type Coding gene
  • Location Chr3 : 5810476-5812605 : negative

Gene Family Information

  • ID HOM05D006900
  • #Genes/#Species 117/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G17040.3
  • symbol HCF107
  • uniprot Q8RWG2

Descriptions

  • Description high chlorophyll fluorescent 107
  • Computational description high chlorophyll fluorescent 107 (HCF107); FUNCTIONS IN: binding; INVOLVED IN: plastid organization, RNA processing, regulation of translation; LOCATED IN: chloroplast, plasma membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor-related (TAIR:AT4G03430.1); Has 8355 Blast hits to 4834 proteins in 935 species: Archae - 387; Bacteria - 2714; Metazoa - 1907; Fungi - 1281; Plants - 751; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IMP
IBA
IEA
Gene OntologymRNA processing1 2
GO:0006397
IEA
InterPromRNA processing
GO:0006417
IMP
IBA
Gene Ontologyregulation of translation1 3
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IMP
Gene OntologyRNA processing3
GO:0006396
IEA
InterProRNA processing
GO:0009657
IMP
Gene Ontologyplastid organization3
GO:0010114
IEP
Gene Ontologyresponse to red light4
GO:1901918
IDA
Gene Ontologynegative regulation of exoribonuclease activity5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003727
IDA
IBA
Gene Ontologysingle-stranded RNA binding1 5
GO:0003729
IDA
IEA
Gene OntologymRNA binding6
GO:0003729
IEA
InterPromRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005515
IEA
InterProprotein binding
GO:0043621
IDA
Gene Ontologyprotein self-association5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM, IBA
Gene Ontologychloroplast1 7
GO:0009570
IEA
GOA Databasechloroplast stroma
GO:0009570
IDA
Gene Ontologychloroplast stroma8
GO:0031969
IEA
GOA Databasechloroplast membrane
GO:0031969
IDA
Gene Ontologychloroplast membrane8
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0009536
IEA
GOA Databaseplastid
GO:0016020
IEA
GOA Databasemembrane
GO:0009941
IDA
Gene Ontologychloroplast envelope8
GO:0005634
ISM
Gene Ontologynucleus
GO:0000325
HDA
Gene Ontologyplant-type vacuole9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003107 HAT (Half-A-TPR) repeat
IPR019734 Tetratricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR044624 Tetratricopeptide-like repeat protein Mbb1-like
Mapman id Description
16.11.5.5 RNA processing.organelle machinery.post-transcriptional gene expression regulation.plastidial transcript stability factor (HCF107)