Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 2843.9 1450 100.0
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 2491.1 1423 87.6
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 2006.9 1152 89.1
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1848.9 1424 66.4
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 1842.8 1439 65.9
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 1836.2 1434 65.5
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 1819.3 1439 64.7
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1808.9 1442 64.2
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 1806.6 1439 64.6
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 1806.2 1442 64.1
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 1805.4 1440 64.3
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 1804.6 1442 64.6
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 1803.9 1436 65.0
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 1800.8 1442 63.9
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 1800.8 1443 63.9
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 1796.2 1442 63.0
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 1795.4 1452 63.5
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1795.0 1438 64.1
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 1793.9 1435 63.8
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1788.5 1440 63.4
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1781.9 1439 63.2
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 1781.1 1439 63.0
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1778.1 1437 63.0
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1771.9 1439 63.3
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1771.1 1436 62.5
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 1771.1 1434 62.9
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 1765.4 1439 63.7
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 1762.3 1436 62.6
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 1761.5 1438 62.2
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 1761.1 1458 62.3
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 1760.7 1436 62.7
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1760.3 1434 62.2
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1758.8 1437 62.4
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 1758.4 1440 62.8
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1755.7 1429 63.8
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1755.3 1442 62.6
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1751.9 1459 62.9
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 1751.9 1453 62.4
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 1745.3 1433 62.3
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1743.0 1456 62.3
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1742.6 1438 62.0
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 1742.6 1495 61.3
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 1741.9 1434 61.5
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 1741.9 1434 62.1
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1741.1 1434 61.4
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1741.1 1434 61.5
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 1740.3 1494 60.6
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1739.5 1438 62.8
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1739.2 1434 61.9
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1737.2 1439 62.5
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 1736.9 1434 61.9
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1735.7 1434 61.4
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1732.6 1449 61.5
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1731.5 1440 61.6
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1729.1 1438 62.2
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1726.8 1431 61.4
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 1726.1 1460 61.7
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1723.0 1435 61.3
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1719.5 1436 62.0
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1714.1 1496 60.2
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1712.6 1436 61.3
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1712.2 1433 61.2
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1711.4 1446 61.6
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1710.3 1427 61.3
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 1707.6 1434 60.9
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1704.1 1509 59.6
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1700.6 1439 61.2
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 1699.5 1440 60.8
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1694.9 1446 60.9
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1687.5 1439 60.8
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 1685.6 1436 60.5
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1680.2 1431 60.4
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1679.8 1459 59.6
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1672.5 1439 60.9
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1669.8 1442 60.3
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1663.3 1428 60.8
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 1657.5 1431 59.8
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 1653.3 1435 59.6
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1652.9 1436 59.6
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1650.6 1430 59.9
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 1647.9 1436 59.5
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1647.1 1434 59.4
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1645.6 1430 59.5
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1642.5 1440 59.4
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1642.5 1440 59.4
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1639.8 1437 58.9
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1632.8 1431 59.0
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1630.9 1479 58.5
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1630.5 1440 59.0
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1628.2 1432 58.8
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1627.8 1439 58.7
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1623.2 1420 59.7
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1622.4 1443 58.4
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1622.1 1441 58.4
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1621.3 1439 58.5
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1593.2 1407 59.0
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1593.2 1303 63.3
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1586.6 1299 63.1
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1577.8 1305 63.1
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1526.5 1473 56.0
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1510.4 1362 58.3
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1506.9 1428 56.4
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1498.8 1298 60.2
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1483.0 1389 57.7
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1477.2 1225 62.0
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1433.3 1462 51.4
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1432.9 1432 54.0
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1421.0 1492 51.0
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1416.0 1169 62.7
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1265.4 927 67.9
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1193.3 1242 51.3
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1184.1 1353 49.4
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1147.1 1089 57.5
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1084.3 1374 46.5
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 1.7e-298 1030.0 1361 45.3
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.2e-276 956.1 845 57.0
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 7.4e-257 891.7 1126 46.9
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.8e-248 863.2 732 61.6
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 6.9e-239 832.0 698 60.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 8.5e-213 745.3 779 52.5
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 2.8e-200 703.7 702 53.8
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.4e-199 700.7 526 65.6
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.7e-184 650.2 595 58.2
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 2.4e-183 647.5 924 42.9
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 6.2e-163 579.7 560 53.2
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 1.6e-158 565.1 835 41.0
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 5.8e-137 493.4 742 40.4
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.6e-137 493.0 471 55.0
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 5.7e-132 476.9 436 59.9
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.7e-131 474.2 310 69.4
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.3e-117 428.3 480 51.7
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 9.1e-114 416.4 560 45.0
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 7.9e-110 403.3 769 36.0
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 2.7e-102 378.3 201 96.5
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 4.0e-93 347.8 1723 24.0
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.5e-87 328.6 294 59.9
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 2.5e-87 328.6 1533 25.4
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.6e-76 292.0 344 48.3
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 5.8e-76 290.8 1591 24.6
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 1.7e-75 289.3 212 68.9
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.0e-73 282.3 221 65.6
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 6.2e-62 244.2 127 94.5
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.1e-61 243.4 228 54.8
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.2e-52 213.4 239 51.5
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.2e-52 213.4 126 88.9
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.5e-52 213.0 182 62.1
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 2.5e-39 169.1 100 73.0
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 3.3e-39 168.7 173 49.7
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 9.6e-39 167.2 103 68.0
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 2.4e-37 162.5 102 73.5
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 1.2e-33 150.2 159 49.7
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 7.9e-33 147.5 183 48.6
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.8e-32 146.4 218 45.9
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.5e-31 143.3 352 32.1
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 2.7e-25 122.5 705 23.1
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 3.8e-19 102.1 100 56.0
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 3.2e-18 99.0 56 75.0
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.2e-18 98.6 58 69.0
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.3e-14 84.7 133 38.3
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.5e-12 78.6 70 51.4
Zm00001eb020800 Zea mays HOM05D000351 ORTHO05D000250 1.0e-11 77.4 55 67.3
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 6.5e-11 74.7 64 54.7
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.0e-08 67.4 58 60.3
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 2.3e-08 66.2 57 56.1


User provided reference genes

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