Gene: Pp3c8_3720
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c8_3720
- Transcript Identifier Pp3c8_3720V3.1
- Gene Type Coding gene
- Location Chr08 : 1950702-1958853 : positive
Gene Family Information
- ID HOM05D001486
- #Genes/#Species 428/100
- Phylogenetic origin
- ID ORTHO05D004921
- #Genes/#Species 168/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name Pp3c8_3720V3.1
- pacid 32964098
- alias Phpat.008G016100
- alias Pp1s35_255V6
- uniprot A0A2K1K622
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006405 | IBA | GOA Database | RNA export from nucleus | |
| GO:0006661 | ISO | PLAZA Homology (enrichment) | phosphatidylinositol biosynthetic process | HOM05D001486 |
| GO:0000972 | IBA | GOA Database | transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery | |
| GO:0006606 | IBA | GOA Database | protein import into nucleus | |
| GO:0036228 | IBA | GOA Database | protein localization to nuclear inner membrane | |
| GO:0006913 | IEA | GOA Database | nucleocytoplasmic transport | |
| GO:0006913 | IEA | InterPro | nucleocytoplasmic transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G14850 |
| GO:0017056 | IBA IEA | GOA Database | structural constituent of nuclear pore | |
| GO:0017056 | IEA | InterPro | structural constituent of nuclear pore |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT1G14850 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G14850 |
| GO:0070772 | ISO | PLAZA Homology (enrichment) | PAS complex | HOM05D001486 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT1G14850 |
| GO:0005643 | IEA | GOA Database | nuclear pore | |
| GO:0005643 | IEA | InterPro | nuclear pore | |
| GO:0044611 | IBA | GOA Database | nuclear pore inner ring | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR042533 | Nucleoporin, Nup155-like, C-terminal, subdomain 1 |
| IPR042538 | Nucleoporin, Nup155-like, C-terminal, subdomain 3 |
| IPR014908 | Nucleoporin, Nup133/Nup155-like, N-terminal |
| IPR007187 | Nucleoporin, Nup133/Nup155-like, C-terminal |
| IPR004870 | Nucleoporin, Nup155-like |
| IPR042537 | Nucleoporin, Nup155-like, C-terminal, subdomain 2 |
| Mapman id | Description |
|---|---|
| 23.5.1.1.2.3 | Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (NUP155) |