Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 8.9e-309 1062.8 532 100.0
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 6.2e-278 960.3 534 89.9
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 9.6e-247 856.7 534 80.0
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 2.7e-209 732.3 535 66.9
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 9.7e-207 723.8 533 67.9
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 2.0e-204 716.1 542 67.7
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 2.0e-199 699.5 536 65.1
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 3.8e-195 685.3 534 63.7
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.5e-194 683.3 538 63.0
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 7.2e-194 681.0 540 67.0
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.1e-168 597.4 544 56.1
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 8.3e-166 587.8 539 56.2
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.7e-164 582.8 540 56.3
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 3.3e-162 575.9 535 54.8
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 4.7e-161 572.0 531 55.6
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 6.8e-160 568.2 539 55.7
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.2e-159 567.4 536 55.2
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.0e-159 566.6 545 53.8
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 2.9e-158 562.8 535 52.9
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 4.2e-157 558.9 534 52.1
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 3.5e-156 555.8 536 53.7
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.8e-156 554.7 532 54.5
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 6.6e-155 551.6 534 52.8
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 8.7e-155 551.2 546 52.4
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.5e-154 550.4 539 53.4
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 1.9e-154 550.1 532 54.3
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 5.6e-154 548.5 537 53.3
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-153 547.4 529 54.3
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 1.3e-153 547.4 533 52.2
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.6e-153 547.0 538 52.2
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.8e-152 543.5 542 50.2
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 3.1e-152 542.7 536 52.6
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 3.1e-152 542.7 539 51.9
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 2.2e-150 536.6 539 52.1
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 2.9e-150 536.2 536 51.7
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 6.4e-150 535.0 531 52.4
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 8.4e-150 534.6 538 51.1
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.9e-149 533.5 525 53.3
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.2e-149 532.7 537 52.1
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 5.4e-149 531.9 537 52.1
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.1e-149 531.6 524 53.1
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.2e-148 530.8 533 51.8
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.6e-148 530.4 536 51.5
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 2.1e-148 530.0 550 50.9
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.0e-147 527.7 540 51.5
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 3.0e-147 526.2 534 52.4
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 5.1e-147 525.4 529 52.2
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.8e-145 518.8 525 52.2
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.1e-144 517.7 529 51.0
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 3.1e-144 516.2 536 50.7
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 5.8e-143 511.9 536 50.9
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 3.8e-142 509.2 528 49.6
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.9e-141 506.9 529 49.0
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.1e-140 503.4 535 49.5
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 2.5e-138 496.5 533 50.1
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 3.3e-138 496.1 531 49.5
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.8e-137 493.0 536 50.6
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 3.7e-137 492.7 538 50.4
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.4e-136 490.7 526 49.8
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 2.4e-136 490.0 537 48.2
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 4.9e-134 482.3 543 49.5
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 6.5e-134 481.9 532 48.7
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.1e-133 481.1 529 49.9
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 7.1e-133 478.4 537 47.3
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 3.5e-132 476.1 537 48.4
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 3.9e-131 472.6 545 47.0
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 8.7e-131 471.5 445 55.3
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 8.2e-129 464.9 549 46.6
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 2.4e-128 463.4 541 45.8
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 3.1e-128 463.0 533 47.5
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.2e-127 461.1 548 46.5
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 4.5e-127 459.1 534 47.6
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 7.6e-127 458.4 542 46.1
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.7e-126 457.2 538 47.8
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 1.1e-125 454.5 546 45.4
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.4e-125 454.1 550 45.5
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 3.2e-125 453.0 538 46.1
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 7.2e-125 451.8 552 44.9
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.3e-123 447.6 538 45.4
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.3e-123 447.6 538 45.4
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 8.7e-123 444.9 545 45.0
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 2.5e-122 443.4 557 42.5
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 4.1e-120 436.0 456 51.8
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 2.6e-119 433.3 529 44.6
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 2.5e-117 426.8 534 43.4
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 1.6e-116 424.1 528 43.6
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 1.6e-116 424.1 539 44.2
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 9.7e-114 414.8 538 43.3
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 3.1e-112 409.8 534 44.8
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.0e-110 404.8 588 41.3
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 2.2e-110 403.7 526 42.4
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 2.2e-110 403.7 526 42.4
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 2.2e-110 403.7 526 42.4
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 6.5e-110 402.1 551 40.8
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 7.2e-109 398.7 527 41.6
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 9.4e-109 398.3 529 42.0
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 2.1e-108 397.1 529 41.6
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.8e-107 394.0 424 50.7
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.0e-107 393.3 534 42.7
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 6.3e-105 385.6 529 42.3
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 2.2e-102 377.1 513 42.7
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 7.5e-98 362.1 432 47.0
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.8e-89 333.6 507 39.8
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 1.9e-85 320.9 483 40.0
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 9.4e-85 318.5 553 36.5
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.7e-84 316.2 574 36.2
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.3e-81 305.4 298 53.0
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.5e-79 300.1 331 49.2
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 1.4e-75 288.1 301 49.5
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 4.9e-73 279.6 419 41.3
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.1e-72 278.5 627 30.8
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 6.6e-70 269.2 282 48.2
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.6e-63 248.1 228 52.2
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 2.5e-61 240.7 333 41.7
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 3.6e-60 236.9 571 32.0
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.4e-59 235.0 212 58.0
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.1e-56 225.3 565 30.6
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 4.7e-44 183.3 198 44.4
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 6.2e-44 183.0 562 27.0
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 2.4e-43 181.0 392 32.1
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 2.4e-40 171.0 561 27.1
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 1.5e-37 161.8 290 34.8
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 3.1e-35 154.1 320 31.9
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.9e-24 118.2 130 46.9
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 7.9e-23 112.8 104 49.0
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.1e-21 109.0 109 49.5
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.9e-19 99.8 184 38.0
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.0e-19 99.4 184 38.0
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 2.9e-17 94.4 295 27.5
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 3.8e-17 94.0 213 31.0
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.1e-16 92.4 117 43.6
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 9.3e-16 89.4 122 36.9
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 5.1e-14 83.6 60 58.3
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.9e-13 81.6 143 37.1
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.9e-13 81.6 69 63.8
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.1e-12 78.2 98 39.8
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.7e-09 68.6 89 42.7
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 2.2e-09 68.2 172 22.1
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 2.2e-09 68.2 283 23.3
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.0e-09 67.0 106 39.6
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 1.9e-08 65.1 157 31.2
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.2e-08 64.3 158 32.9
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.2e-07 62.4 65 47.7
Glyma.03G134600 Glycine max HOM05D001573 ORTHO05D001660 1.6e-07 62.0 316 23.7
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 2.7e-07 61.2 271 21.0
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.6e-07 60.5 67 44.8
Sabra16G0149300 Salix brachista HOM05D002702 ORTHO05D003416 4.6e-07 60.5 266 24.4
arahy.Tifrunner.gnm1.ann1.H5KDYL Arachis hypogaea HOM05D001573 ORTHO05D001660 7.9e-07 59.7 322 22.7
arahy.Tifrunner.gnm1.ann1.TYVF6X Arachis hypogaea HOM05D001573 ORTHO05D001660 7.9e-07 59.7 322 22.7
TWI77G0498 Tripterygium wilfordii HOM05D001573 ORTHO05D001660 7.9e-07 59.7 322 22.7
A03p36480 Brassica napus HOM05D001573 ORTHO05D001660 1.0e-06 59.3 322 23.3
Sc25g0001160 Simmondsia chinensis HOM05D002702 ORTHO05D003416 1.0e-06 59.3 304 23.4
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-06 58.9 113 27.4
AT3G10330 Arabidopsis thaliana HOM05D001573 ORTHO05D001660 1.8e-06 58.5 322 23.0
Lalb_Chr06g0173461 Lupinus albus HOM05D001573 ORTHO05D001660 1.8e-06 58.5 322 23.0
AL3G21660 Arabidopsis lyrata HOM05D001573 ORTHO05D001660 3.0e-06 57.8 322 23.0
Carub.0003s0951 Capsella rubella HOM05D001573 ORTHO05D001660 3.0e-06 57.8 322 23.0
Carub.0006s0317 Capsella rubella HOM05D001573 ORTHO05D001660 3.0e-06 57.8 322 22.7
Sp3g08600 Schrenkiella parvula HOM05D001573 ORTHO05D001660 3.0e-06 57.8 322 23.0
THA.LOC104826895 Tarenaya hassleriana HOM05D001573 ORTHO05D001660 3.0e-06 57.8 322 23.3
Lsat_1_v5_gn_9_30840 Lactuca sativa HOM05D001573 ORTHO05D001660 3.9e-06 57.4 322 22.0
Gohir.A01G130800 Gossypium hirsutum HOM05D001573 ORTHO05D001660 5.1e-06 57.0 322 22.7
Gohir.D01G119900 Gossypium hirsutum HOM05D001573 ORTHO05D001660 5.1e-06 57.0 322 22.7
Gorai.002G146300 Gossypium raimondii HOM05D001573 ORTHO05D001660 5.1e-06 57.0 322 22.7
Lj5g0004050 Lotus japonicus HOM05D001573 ORTHO05D001660 6.7e-06 56.6 322 22.7
Prupe.7G055400 Prunus persica HOM05D001573 ORTHO05D001660 6.7e-06 56.6 322 22.7
Sp6g38540 Schrenkiella parvula HOM05D001573 ORTHO05D001660 6.7e-06 56.6 322 23.0
CANSAT80G1061 Cannabis sativa HOM05D001573 ORTHO05D001660 8.7e-06 56.2 322 22.7
CANSAT80G1703 Cannabis sativa HOM05D001573 ORTHO05D001660 8.7e-06 56.2 322 22.7
Ciclev10005479m.g Citrus clementina HOM05D001573 ORTHO05D001660 8.7e-06 56.2 322 22.7
FvH4_6g24330 Fragaria vesca HOM05D001573 ORTHO05D001660 8.7e-06 56.2 322 22.7
FAN05G4302 Fragaria x ananassa HOM05D001573 ORTHO05D001660 8.7e-06 56.2 322 22.7
FAN14G1453 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.7e-06 56.2 49 65.3
Glyma.10G108600 Glycine max HOM05D001573 ORTHO05D001660 8.7e-06 56.2 323 22.6
Lalb_Chr21g0316531 Lupinus albus HOM05D001573 ORTHO05D001660 8.7e-06 56.2 322 22.7
PGR004G1049 Punica granatum HOM05D001573 ORTHO05D001660 8.7e-06 56.2 322 23.6
RcHm_v2.0_Chr3g0483261 Rosa chinensis HOM05D001573 ORTHO05D001660 8.7e-06 56.2 322 22.7
GSVIVG01029415001 Vitis vinifera HOM05D001573 ORTHO05D001660 8.7e-06 56.2 322 22.0
GSVIVG01033246001 Vitis vinifera HOM05D001573 ORTHO05D001660 8.7e-06 56.2 322 22.4


User provided reference genes

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