Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 8.9e-204 713.4 361 100.0
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 3.9e-191 671.4 361 93.1
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 4.3e-190 667.9 361 92.5
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 8.1e-181 637.1 362 88.7
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 6.7e-175 617.5 361 83.9
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 2.6e-171 605.5 362 82.3
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.3e-170 603.2 361 82.0
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 5.0e-170 601.3 362 82.0
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 1.2e-163 580.1 362 80.1
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 2.0e-163 579.3 362 79.6
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 3.7e-157 558.5 361 78.4
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 5.7e-150 534.6 364 73.9
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 1.1e-148 530.4 364 73.6
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 1.1e-148 530.4 364 73.9
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 7.7e-147 524.2 364 71.4
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.0e-146 523.9 357 73.9
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.0e-146 523.9 364 73.6
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.2e-146 522.7 364 73.1
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 5.0e-146 521.5 298 86.2
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.2e-145 517.7 367 72.5
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 1.2e-144 516.9 365 72.3
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 1.6e-144 516.5 364 72.8
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 2.1e-144 516.2 364 72.0
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 2.7e-144 515.8 364 72.5
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 2.7e-144 515.8 364 72.0
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 6.1e-144 514.6 364 71.7
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.4e-143 513.5 364 71.4
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 1.4e-143 513.5 367 72.8
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.3e-143 512.7 364 71.7
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.1e-142 510.4 364 71.7
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 3.3e-142 508.8 380 68.4
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 3.3e-142 508.8 364 70.1
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 4.4e-142 508.4 364 70.3
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 5.7e-142 508.1 364 70.1
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 9.7e-142 507.3 364 72.0
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 1.7e-141 506.5 364 69.2
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.7e-141 506.5 367 71.4
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 1.7e-141 506.5 364 71.2
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 2.2e-141 506.1 368 71.2
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 2.2e-141 506.1 362 69.6
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 6.3e-141 504.6 364 70.1
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 6.3e-141 504.6 364 69.8
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 1.1e-140 503.8 374 69.5
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.1e-140 503.8 364 70.3
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.1e-140 503.8 364 69.5
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 1.1e-140 503.8 364 70.3
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 1.4e-140 503.4 364 71.2
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 1.8e-140 503.1 385 66.8
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 2.4e-140 502.7 364 70.9
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 3.1e-140 502.3 365 68.8
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.2e-139 500.4 364 70.9
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-139 500.4 364 70.9
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-139 500.4 364 70.9
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.2e-138 496.1 366 70.5
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 4.0e-135 485.3 364 68.4
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 4.0e-135 485.3 363 69.4
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 6.8e-135 484.6 372 68.3
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.0e-134 483.0 361 67.3
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.6e-134 482.6 361 67.3
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 7.5e-134 481.1 365 67.4
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.4e-132 476.9 365 66.8
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 9.1e-132 474.2 366 67.5
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 9.1e-132 474.2 363 67.2
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 2.0e-131 473.0 362 67.1
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 5.0e-130 468.4 366 65.0
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 7.2e-129 464.5 365 66.8
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.2e-128 463.8 337 68.5
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 4.7e-128 461.8 307 74.6
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.0e-127 460.7 364 67.3
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.8e-127 459.9 366 66.7
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 2.3e-127 459.5 364 66.2
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 4.0e-127 458.8 364 66.8
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 5.2e-127 458.4 366 65.8
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 5.2e-127 458.4 365 66.3
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 1.5e-126 456.8 364 64.8
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 5.7e-126 454.9 366 65.8
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 5.7e-126 454.9 363 66.4
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 7.5e-126 454.5 365 64.4
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 1.7e-125 453.4 356 68.0
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 1.7e-125 453.4 364 65.9
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 1.4e-124 450.3 391 62.4
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 3.1e-124 449.1 364 65.9
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 5.4e-124 448.4 357 65.3
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.7e-123 446.0 364 66.5
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.3e-122 443.7 372 65.6
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.7e-122 443.4 363 63.4
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 5.0e-122 441.8 365 64.4
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.3e-121 438.7 368 63.9
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 5.2e-119 431.8 392 59.4
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.2e-118 430.6 364 63.7
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.2e-117 426.4 369 61.8
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 2.2e-117 426.4 320 67.5
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 2.7e-115 419.5 333 67.0
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 5.0e-114 415.2 366 57.7
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 2.3e-111 406.4 379 57.3
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 3.7e-109 399.1 367 56.4
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 2.4e-108 396.4 364 57.4
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 9.2e-108 394.4 354 57.6
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 8.6e-106 387.9 363 59.8
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 6.8e-103 378.3 276 68.1
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.7e-101 373.6 341 57.2
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 6.4e-101 371.7 362 56.6
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.2e-100 369.4 378 57.1
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 8.6e-98 361.3 365 55.9
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.6e-96 357.1 383 48.8
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 2.8e-96 356.3 307 58.0
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.2e-91 340.9 244 69.7
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 4.2e-84 315.8 195 79.5
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 1.3e-82 310.8 353 46.5
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 8.7e-82 308.1 194 75.8
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 5.6e-81 305.4 366 45.4
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 7.1e-76 288.5 173 83.2
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 1.3e-74 284.3 169 82.8
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 6.7e-74 282.0 400 41.5
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 8.7e-74 281.6 277 56.0
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 5.8e-70 268.9 364 45.9
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 1.5e-65 254.2 214 59.8
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.5e-62 244.2 306 48.4
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 7.1e-60 235.3 168 72.6
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 8.2e-56 221.9 212 54.7
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.9e-49 200.7 160 64.4
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.1e-47 194.9 122 80.3
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.6e-46 190.3 122 78.7
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.0e-45 188.3 138 71.0
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 2.6e-41 173.7 307 38.8
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 1.3e-40 171.4 165 57.6
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 5.3e-39 166.0 253 39.1
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 1.0e-37 161.8 197 45.7
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 5.5e-36 156.0 122 68.0
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 2.1e-35 154.1 135 61.5
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 3.3e-33 146.7 148 58.1
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.7e-32 144.4 176 42.6
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 2.7e-27 127.1 134 53.7
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 9.7e-25 118.6 114 52.6
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 5.3e-23 112.8 72 75.0
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 3.5e-22 110.2 399 24.3
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 6.5e-21 105.9 72 73.6
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.2e-20 103.2 81 63.0
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.1e-15 88.6 77 54.5
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-14 84.3 134 35.8
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 1.3e-08 65.1 311 23.8


User provided reference genes

Program Settings