Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 1.2e-206 723.8 644 100.0
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 1.6e-182 643.7 650 93.2
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 1.3e-173 614.0 654 91.7
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 2.9e-173 612.8 653 91.6
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 9.4e-172 607.8 648 91.8
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 2.9e-165 586.3 647 90.3
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 6.6e-165 585.1 647 90.1
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 1.5e-164 583.9 647 90.6
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 1.9e-164 583.6 647 90.1
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 2.0e-161 573.5 648 89.5
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 2.0e-161 573.5 648 89.5
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 4.7e-155 552.4 658 84.5
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 2.4e-119 433.7 635 78.7
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 5.6e-116 422.5 274 86.5
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 2.5e-92 344.0 638 72.7
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 8.2e-91 339.0 646 69.8
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 2.4e-90 337.4 601 73.7
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 6.9e-90 335.9 650 70.9
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 2.6e-89 334.0 649 69.8
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 1.0e-88 332.0 635 71.7
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 6.5e-88 329.3 633 71.1
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 3.2e-87 327.0 564 77.3
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 4.2e-87 326.6 659 69.8
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 3.6e-86 323.6 583 74.8
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 4.6e-86 323.2 617 71.2
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.0e-85 322.0 638 70.2
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 1.8e-85 321.2 589 75.0
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 3.0e-85 320.5 645 70.2
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 6.7e-85 319.3 559 77.6
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 2.0e-84 317.8 637 70.0
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 2.5e-84 317.4 630 71.9
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 3.3e-84 317.0 649 70.6
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 3.3e-84 317.0 647 68.8
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 3.3e-84 317.0 650 68.2
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 5.7e-84 316.2 627 71.6
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.7e-83 314.7 552 78.3
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.8e-83 313.9 555 77.8
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 6.3e-83 312.8 600 73.3
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 1.4e-82 311.6 566 75.3
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 1.8e-82 311.2 630 70.6
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 1.8e-82 311.2 633 70.1
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 4.1e-82 310.1 626 70.1
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 5.3e-82 309.7 645 70.2
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 6.9e-82 309.3 642 69.8
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 1.5e-81 308.1 596 72.5
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 1.5e-81 308.1 595 73.8
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 2.0e-81 307.8 626 69.8
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 2.0e-81 307.8 596 72.5
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 2.0e-81 307.8 589 73.3
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 2.6e-81 307.4 565 75.2
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 3.4e-81 307.0 569 75.6
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 4.5e-81 306.6 640 68.3
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 7.7e-81 305.8 622 69.9
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 7.7e-81 305.8 526 80.6
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 7.7e-81 305.8 574 65.7
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 1.7e-80 304.7 512 81.6
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 3.8e-80 303.5 637 67.8
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 6.5e-80 302.8 636 69.0
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 8.5e-80 302.4 667 67.0
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 8.5e-80 302.4 631 69.3
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 8.5e-80 302.4 589 72.8
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 8.5e-80 302.4 645 68.4
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 1.1e-79 302.0 605 71.9
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 1.2e-78 298.5 612 70.8
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 1.2e-78 298.5 552 74.6
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 2.7e-78 297.4 553 75.6
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 6.1e-78 296.2 632 69.1
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 1.4e-77 295.0 579 72.5
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 1.4e-77 295.0 554 75.8
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 3.9e-77 293.5 638 69.1
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 3.9e-77 293.5 521 78.3
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 3.9e-77 293.5 521 78.3
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 3.9e-77 293.5 622 68.6
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 6.7e-77 292.7 521 77.9
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 2.0e-76 291.2 633 67.6
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 9.7e-76 288.9 632 67.9
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 4.8e-75 286.6 525 76.8
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 6.3e-75 286.2 622 68.3
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 2.4e-74 284.3 607 55.0
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 2.4e-74 284.3 526 76.2
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 4.1e-74 283.5 588 70.4
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 2.0e-73 281.2 567 73.9
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 2.0e-73 281.2 528 77.7
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 3.5e-73 280.4 622 68.2
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 1.7e-72 278.1 674 66.2
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 1.1e-71 275.4 543 39.0
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 2.5e-71 274.2 685 41.6
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 2.1e-70 271.2 565 73.1
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 3.9e-69 266.9 638 56.4
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 4.1e-66 256.9 595 63.9
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 4.1e-66 256.9 656 65.2
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 3.5e-65 253.8 534 73.8
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 4.7e-62 243.4 265 52.8
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 6.8e-61 239.6 195 64.6
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 5.7e-60 236.5 220 57.7
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 3.5e-57 227.3 182 62.6
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 1.3e-56 225.3 647 59.0
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 8.6e-48 196.1 155 59.4
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 3.6e-46 190.7 471 76.0
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 1.6e-38 165.2 261 43.3
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 4.7e-38 163.7 184 64.7
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 8.9e-37 159.5 110 65.5
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 1.6e-33 148.7 110 64.5
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 6.6e-32 143.3 115 58.3
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 2.3e-29 134.8 110 61.8
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.0e-28 131.7 80 80.0
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 1.3e-27 129.0 110 53.6
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.3e-27 129.0 172 48.3
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.2e-27 128.3 80 77.5
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.4e-26 124.8 108 59.3
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 1.1e-21 109.4 191 45.5
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 4.9e-19 100.5 120 44.2
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 1.1e-18 99.4 123 43.9
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 3.3e-15 87.8 94 54.3
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 8.9e-13 79.7 112 37.5
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 4.9e-11 73.9 72 86.1
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 1.4e-10 72.4 207 35.7


User provided reference genes

Program Settings