Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1727.2 859 100.0
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1686.8 859 97.6
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1681.0 859 97.2
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1681.0 859 97.2
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1681.0 859 97.2
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1676.0 859 96.9
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1676.0 859 96.9
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1646.7 859 94.9
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1634.0 859 95.0
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1624.8 859 93.8
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1623.6 859 94.2
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1567.7 862 90.0
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1540.8 863 87.9
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1375.9 864 79.1
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1372.1 866 79.2
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1371.7 866 79.1
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1365.1 866 78.9
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1351.7 883 76.4
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1348.6 865 76.8
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1345.5 865 77.8
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1342.8 855 78.2
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1339.7 865 77.6
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1336.6 864 76.9
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1336.2 865 77.9
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1330.1 866 77.0
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1328.9 856 77.1
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1325.8 865 76.0
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1325.1 865 76.5
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1323.9 859 76.4
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1323.1 865 75.7
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1322.0 865 75.8
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1321.6 913 73.6
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1320.8 865 77.3
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1313.9 866 75.3
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1312.0 865 75.6
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1312.0 865 75.6
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1311.2 869 76.4
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1311.2 865 76.3
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1310.8 867 75.5
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1309.7 865 75.6
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1308.9 866 75.5
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1307.7 865 75.4
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1306.2 867 75.3
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1305.0 855 75.7
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1305.0 862 74.7
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1305.0 862 75.3
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1303.5 862 74.9
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1302.3 865 74.7
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1300.0 865 75.0
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1299.6 862 75.1
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 859 75.8
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1298.5 799 83.7
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1298.5 862 74.7
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1290.4 867 74.6
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1288.9 868 74.9
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1287.7 867 74.5
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1286.2 859 73.9
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1284.2 872 72.9
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1280.4 872 72.9
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1278.5 865 72.9
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1278.5 925 70.6
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1276.2 931 69.8
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1274.6 865 73.5
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1274.6 872 72.7
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1271.9 859 73.2
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1269.6 872 72.6
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1268.8 693 93.9
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1268.4 865 72.5
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1265.0 867 73.8
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1264.6 855 74.0
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1260.7 944 69.3
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1260.4 888 71.1
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1260.0 863 73.1
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1254.2 854 71.7
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1253.4 865 72.3
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1251.9 868 71.8
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1250.0 865 72.1
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1249.6 931 68.1
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1248.8 931 68.1
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1248.0 858 72.0
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1244.6 858 72.0
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1242.3 880 72.0
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1234.6 960 66.1
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1228.8 863 70.2
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1226.5 783 78.4
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1224.5 807 73.7
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1224.5 895 70.1
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1182.2 744 78.0
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1182.2 852 68.5
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1181.8 878 66.6
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1166.4 862 67.4
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 4.5e-310 1067.8 855 64.0
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 4.6e-307 1057.7 682 81.4
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 1.3e-301 1039.6 854 63.8
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 3.3e-297 1025.0 864 58.8
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 3.3e-297 1025.0 852 60.2
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.0e-294 1015.8 867 63.1
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 2.3e-290 1002.3 898 58.9
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 1.1e-284 983.4 1157 50.1
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 7.9e-283 977.2 853 56.5
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.6e-267 926.4 644 71.9
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.5e-260 902.5 874 59.6
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 2.6e-249 865.9 620 69.8
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 4.2e-244 848.6 748 61.8
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 4.4e-201 705.7 494 71.3
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 9.3e-191 671.4 434 77.9
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 4.5e-185 652.5 468 72.6
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-182 643.7 623 58.1
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 3.4e-177 626.3 425 71.8
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.2e-161 574.7 863 38.8
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 3.2e-159 566.6 873 38.9
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.6e-153 547.0 370 76.2
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.9e-151 540.8 342 79.5
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 8.8e-149 531.9 378 68.0
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 4.2e-143 513.1 371 74.9
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 5.2e-141 506.1 615 51.1
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 3.6e-134 483.4 848 35.3
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 4.9e-123 446.4 453 53.0
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 9.8e-116 422.2 990 30.8
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 9.5e-111 405.6 349 55.0
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.4e-92 343.6 331 52.6
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.9e-92 342.4 282 63.1
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.1e-87 328.9 158 97.5
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 6.0e-81 306.6 259 61.0
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.1e-77 295.8 218 68.8
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.3e-72 278.9 165 81.8
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.5e-68 263.8 319 45.8
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 5.5e-42 177.2 97 84.5
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 2.0e-36 158.7 101 72.3
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-34 152.5 97 72.2
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 2.7e-33 148.3 94 76.6
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-32 144.8 103 69.9
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-31 141.4 94 72.3
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-29 136.0 85 75.3
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 9.1e-29 133.3 111 64.0
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 9.1e-29 133.3 91 70.3
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 2.6e-28 131.7 167 48.5
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.0e-27 129.8 87 70.1
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 4.2e-26 124.4 185 47.0
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.6e-25 122.5 125 56.8
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.8e-24 119.0 113 55.8
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 2.3e-24 118.6 96 64.6
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.0e-24 118.2 160 46.2
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.5e-23 115.9 67 79.1
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 2.0e-23 115.5 103 61.2
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-22 112.5 68 72.1
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-21 107.8 96 59.4
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 2.0e-20 105.5 61 72.1
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 2.7e-20 105.1 64 70.3
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.3e-19 102.8 138 44.2
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-17 95.5 113 46.9
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 1.0e-16 93.2 87 59.8
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 1.0e-16 93.2 87 59.8
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-16 92.8 81 61.7
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 4.8e-14 84.3 52 71.2
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 4.8e-14 84.3 52 71.2
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.1e-10 73.2 37 91.9
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 8.8e-08 63.5 85 48.2
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-07 62.8 41 73.2
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.5e-07 62.8 78 46.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 5.7e-07 60.8 84 35.7
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.7e-06 59.3 34 82.4


User provided reference genes

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