Gene: AT2G38020
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G38020
- Transcript Identifier AT2G38020.1
- Gene Type Coding gene
- Location Chr2 : 15910098-15914190 : negative
Gene Family Information
- ID HOM05D004503
- #Genes/#Species 160/96
- Phylogenetic origin
- ID ORTHO05D005460
- #Genes/#Species 157/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT2G38020.1
- symbol VCL1
- Alias EMB258,MAN,MANGLED
- full_name VACUOLELESS 1
- uniprot Q93VQ0
Descriptions
- Description vacuoleless1 (VCL1)
- Computational description VACUOLELESS 1 (VCL1); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Vps16, N-terminal (InterPro:IPR006926), Vacuolar protein sorting-associated protein 16 (InterPro:IPR016534), Vps16, C-terminal (InterPro:IPR006925); Has 461 Blast hits to 410 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 140; Plants - 46; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0007033 | IMP IEA | GOA Database | vacuole organization | |
| GO:0007033 | TAS | Gene Ontology | vacuole organization | 1 |
| GO:0007033 | IEA | InterPro | vacuole organization | |
| GO:0006886 | IEA | Gene Ontology | intracellular protein transport | |
| GO:0006886 | IEA | InterPro | intracellular protein transport | |
| GO:0051469 | IMP | GOA Database | vesicle fusion with vacuole | |
| GO:0045992 | IMP | GOA Database | negative regulation of embryonic development | |
| GO:0042144 | IBA | Gene Ontology | vacuole fusion, non-autophagic | 2 |
| GO:0016197 | IBA | Gene Ontology | endosomal transport | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003779 | IBA | Gene Ontology | actin binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005774 | IEA | GOA Database | vacuolar membrane | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IEA | InterPro | cytoplasm | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0005773 | IEA | GOA Database | vacuole | |
| GO:0005768 | IBA | Gene Ontology | endosome | 2 |
| GO:0030897 | IDA IBA | Gene Ontology | HOPS complex | 2 3 |
| GO:0033263 | IDA | Gene Ontology | CORVET complex | 3 |
| GO:0005783 | HDA | Gene Ontology | endoplasmic reticulum | 4 |
| GO:0032991 | IPI | Gene Ontology | protein-containing complex | 1 |
| GO:0009705 | IDA | Gene Ontology | plant-type vacuole membrane | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 22.3.4.9.2 | Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.component VPS16/VCL1 |