Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015645m.g Eutrema salsugineum HOM05D003978 ORTHO05D015758 2.3e-19 97.8 47 100.0
AL6G13910 Arabidopsis lyrata HOM05D003978 ORTHO05D006033 5.2e-19 96.7 47 97.9
Sp6g38470 Schrenkiella parvula HOM05D003978 ORTHO05D006033 6.7e-19 96.3 47 97.9
AT5G04280 Arabidopsis thaliana HOM05D003978 ORTHO05D006033 1.1e-18 95.5 47 95.7
Carub.0006s0323 Capsella rubella HOM05D003978 ORTHO05D006033 3.3e-18 94.0 47 93.6
C03p01930 Brassica napus HOM05D003978 ORTHO05D006033 1.3e-17 92.0 47 91.5
CARHR209000 Cardamine hirsuta HOM05D003978 ORTHO05D006033 1.3e-17 92.0 47 91.5
A03p01600 Brassica napus HOM05D003978 ORTHO05D006033 3.7e-17 90.5 47 89.4
BolC3t12747H Brassica oleracea HOM05D003978 ORTHO05D006033 3.7e-17 90.5 47 89.4
BraA03t09534Z Brassica rapa HOM05D003978 ORTHO05D006033 3.7e-17 90.5 47 89.4
THA.LOC104823202 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 4.8e-17 90.1 47 89.4
THA.LOC104816430 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 3.1e-16 87.4 47 87.2
Glyma.10G276500 Glycine max HOM05D003978 ORTHO05D006033 9.4e-13 75.9 46 78.3
Aa31LG1G21070 Aethionema arabicum HOM05D003978 ORTHO05D006033 1.2e-12 75.5 43 81.4
Glyma.20G113200 Glycine max HOM05D003978 ORTHO05D006033 1.2e-12 75.5 46 78.3
VMungo0720G1413 Vigna mungo HOM05D003978 ORTHO05D006033 1.2e-12 75.5 46 76.1
BcaB01g05775 Brassica carinata HOM05D003978 ORTHO05D015758 2.1e-12 74.7 38 89.5
Lj5g0022774 Lotus japonicus HOM05D003978 ORTHO05D006033 2.7e-12 74.3 46 76.1
arahy.Tifrunner.gnm1.ann1.3AH3YU Arachis hypogaea HOM05D003978 ORTHO05D006033 3.6e-12 73.9 46 76.1
Ca_11194_v3 Cicer arietinum L. HOM05D003978 ORTHO05D006033 6.1e-12 73.2 46 73.9
CiPaw.01G267500 Carya illinoinensis HOM05D003978 ORTHO05D006033 8.0e-12 72.8 46 71.7
Cfa001800 Carpinus fangiana HOM05D003978 ORTHO05D006033 2.3e-11 71.2 46 73.9
TWI38G1352 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 2.3e-11 71.2 46 73.9
CiPaw.02G171600 Carya illinoinensis HOM05D003978 ORTHO05D006033 3.0e-11 70.9 46 71.7
Duzib114G0897 Durio zibethinus HOM05D003978 ORTHO05D006033 3.0e-11 70.9 46 73.9
Potri.008G033000 Populus trichocarpa HOM05D003978 ORTHO05D006033 3.0e-11 70.9 46 67.4
PGR044G1831 Punica granatum HOM05D003978 ORTHO05D006033 3.0e-11 70.9 46 71.7
TWI15G0746 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 3.0e-11 70.9 46 73.9
CANSAT64G1994 Cannabis sativa HOM05D003978 ORTHO05D006033 5.2e-11 70.1 46 73.9
TWI63G1197 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 5.2e-11 70.1 46 71.7
HPP92_017522 Vanilla planifolia HOM05D003978 ORTHO05D006033 8.8e-11 69.3 46 71.7
Gohir.D10G209000 Gossypium hirsutum HOM05D003978 ORTHO05D006033 1.2e-10 68.9 46 73.9
Gorai.011G235100 Gossypium raimondii HOM05D003978 ORTHO05D006033 1.2e-10 68.9 46 73.9
Migut.F01713 Erythranthe guttata HOM05D003978 ORTHO05D006033 1.5e-10 68.6 39 79.5
Thecc.10G086400 Theobroma cacao HOM05D003978 ORTHO05D006033 1.5e-10 68.6 46 73.9
Potri.010G228700 Populus trichocarpa HOM05D003978 ORTHO05D006033 2.0e-10 68.2 46 67.4
MD01G1101500 Malus domestica HOM05D003978 ORTHO05D006033 2.6e-10 67.8 46 71.7
TPR.G26271 Trifolium pratense HOM05D003978 ORTHO05D006033 2.6e-10 67.8 46 69.6
CARHR052280 Cardamine hirsuta HOM05D003978 ORTHO05D006033 3.4e-10 67.4 40 75.0
ECA238G2158 Erigeron canadensis HOM05D003978 ORTHO05D006033 3.4e-10 67.4 39 82.1
MSTRG.9145 Avicennia marina HOM05D003978 ORTHO05D006033 4.4e-10 67.0 43 69.8
Cfa001801 Carpinus fangiana HOM05D003978 ORTHO05D006033 4.4e-10 67.0 46 69.6
Lalb_Chr03g0036261 Lupinus albus HOM05D003978 ORTHO05D006033 4.4e-10 67.0 46 67.4
Dinv41792 Davidia involucrata HOM05D003978 ORTHO05D006033 5.7e-10 66.6 47 74.5
Eucgr.J01044 Eucalyptus grandis HOM05D003978 ORTHO05D006033 5.7e-10 66.6 43 69.8
MD07G1168200 Malus domestica HOM05D003978 ORTHO05D006033 5.7e-10 66.6 46 69.6
MBI04_g13679_MAGBIO Magnolia biondii HOM05D003978 ORTHO05D006033 9.8e-10 65.9 46 69.6
ClCG05G021270 Citrullus lanatus HOM05D003978 ORTHO05D006033 1.3e-09 65.5 46 65.2
CsaV3_5G036020 Cucumis sativus L. HOM05D001446 ORTHO05D001360 1.3e-09 65.5 46 65.2
DCAR_006405 Daucus carota HOM05D003978 ORTHO05D006033 1.3e-09 65.5 39 82.1
Nn6g35249 Nelumbo nucifera HOM05D003978 ORTHO05D006033 1.7e-09 65.1 46 67.4
Sed0002426 Sechium edule HOM05D003978 ORTHO05D006033 1.7e-09 65.1 46 65.2
TAR623G0946 Trochodendron aralioides HOM05D003978 ORTHO05D006033 1.7e-09 65.1 46 67.4
TAR633G1384 Trochodendron aralioides HOM05D003978 ORTHO05D006033 2.2e-09 64.7 46 65.2
TAR636G3645 Trochodendron aralioides HOM05D001807 ORTHO05D002044 2.2e-09 64.7 46 65.2
Nitab4.5_0001450g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 2.8e-09 64.3 39 69.2
Nitab4.5_0002285g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 2.8e-09 64.3 39 69.2
CSS0034790 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 3.7e-09 63.9 47 70.2
PGSC0003DMG400016922 Solanum tuberosum HOM05D003978 ORTHO05D006033 3.7e-09 63.9 39 74.4
Aqoxy2G01695 Aquilegia oxysepala HOM05D003978 ORTHO05D006033 4.8e-09 63.5 46 67.4
CsaV3_2G021100 Cucumis sativus L. HOM05D003978 ORTHO05D006033 4.8e-09 63.5 46 65.2
MSTRG.8127 Avicennia marina HOM05D003978 ORTHO05D006033 6.3e-09 63.2 43 67.4
Lsat_1_v5_gn_2_113200 Lactuca sativa HOM05D003978 ORTHO05D006033 6.3e-09 63.2 39 76.9
Lj3A937G87 Lonicera japonica HOM05D003978 ORTHO05D006033 6.3e-09 63.2 42 71.4
PGSC0003DMG400031080 Solanum tuberosum HOM05D003978 ORTHO05D006033 6.3e-09 63.2 39 69.2
HanXRQChr14g0456531 Helianthus annuus HOM05D003978 ORTHO05D006033 1.1e-08 62.4 39 76.9
Sopen11g003980 Solanum pennellii HOM05D003978 ORTHO05D006033 1.1e-08 62.4 39 69.2
Peaxi162Scf00253g00327 Petunia axillaris HOM05D003978 ORTHO05D006033 1.4e-08 62.0 39 69.2
Solyc03g071560.4 Solanum lycopersicum HOM05D003978 ORTHO05D006033 1.4e-08 62.0 39 71.8
Sopen03g019840 Solanum pennellii HOM05D003978 ORTHO05D006033 1.4e-08 62.0 39 71.8
THA.LOC104809978 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 1.8e-08 61.6 41 65.9
FvH4_7g18520 Fragaria vesca HOM05D003978 ORTHO05D006033 2.4e-08 61.2 46 63.0
SEGI_04637 Sequoiadendron giganteum HOM05D003978 ORTHO05D006033 2.4e-08 61.2 46 54.3
PSO339G1141 Papaver somniferum HOM05D003978 ORTHO05D006033 3.1e-08 60.8 47 66.0
PSO801G0725 Papaver somniferum HOM05D003978 ORTHO05D006033 3.1e-08 60.8 47 66.0
Sp2g04070 Schrenkiella parvula HOM05D003978 ORTHO05D006033 3.1e-08 60.8 40 65.0
AUR62026923 Chenopodium quinoa HOM05D003978 ORTHO05D006033 4.1e-08 60.5 46 56.5
AUR62042058 Chenopodium quinoa HOM05D003978 ORTHO05D006033 4.1e-08 60.5 46 56.5
SEGI_12114 Sequoiadendron giganteum HOM05D003978 ORTHO05D006033 4.1e-08 60.5 46 54.3
CANSAT80G2867 Cannabis sativa HOM05D003978 ORTHO05D006033 5.4e-08 60.1 46 54.3
CDE02G4598 Ceratophyllum demersum HOM05D003978 ORTHO05D006033 7.0e-08 59.7 43 62.8
AL2G15940 Arabidopsis lyrata HOM05D003978 ORTHO05D006033 9.1e-08 59.3 40 67.5
Carub.0002s0468 Capsella rubella HOM05D003978 ORTHO05D006033 9.1e-08 59.3 40 67.5
Rhsim03G0089800 Rhododendron simsii HOM05D003978 ORTHO05D006033 9.1e-08 59.3 46 58.7
RcHm_v2.0_Chr1g0362301 Rosa chinensis HOM05D003978 ORTHO05D006033 9.1e-08 59.3 46 63.0
GSVIVG01033666001 Vitis vinifera HOM05D003978 ORTHO05D000124 9.1e-08 59.3 46 60.9
Duzib128G0911 Durio zibethinus HOM05D003978 ORTHO05D006033 1.2e-07 58.9 41 70.7
Thhalv10023624m.g Eutrema salsugineum HOM05D003978 ORTHO05D006033 1.2e-07 58.9 40 65.0
QL07p042820 Quercus lobata HOM05D003978 ORTHO05D006033 1.2e-07 58.9 46 56.5
GSVIVG01016195001 Vitis vinifera HOM05D003978 ORTHO05D006033 1.2e-07 58.9 62 53.2
CDE09G0059 Ceratophyllum demersum HOM05D000278 ORTHO05D004673 1.6e-07 58.5 46 63.0
Peaxi162Scf00145g00811 Petunia axillaris HOM05D003978 ORTHO05D006033 1.6e-07 58.5 39 69.2
CSS0048765 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 2.0e-07 58.2 46 60.9
Zm00001eb302210 Zea mays HOM05D003978 ORTHO05D006033 2.7e-07 57.8 47 53.2
Carub.0004s0457 Capsella rubella HOM05D000142 ORTHO05D000124 3.5e-07 57.4 40 60.0
Nitab4.5_0001359g0090 Nicotiana tabacum HOM05D003978 ORTHO05D006033 4.5e-07 57.0 35 68.6
arahy.Tifrunner.gnm1.ann1.SNA779 Arachis hypogaea HOM05D003978 ORTHO05D006033 5.9e-07 56.6 38 68.4
Oeu007407.1 Olea europaea HOM05D003978 ORTHO05D006033 5.9e-07 56.6 63 52.4
Zm00001eb116730 Zea mays HOM05D003978 ORTHO05D006033 7.7e-07 56.2 47 51.1
Cfa017638 Carpinus fangiana HOM05D003978 ORTHO05D006033 1.0e-06 55.8 46 54.3
Os03g0681900 Oryza sativa ssp. japonica HOM05D003978 ORTHO05D006033 1.0e-06 55.8 46 60.9
Haze_07731 Corylus avellana HOM05D000142 ORTHO05D000124 1.3e-06 55.5 47 46.8
Sabra10G0177400 Salix brachista HOM05D003978 ORTHO05D006033 1.3e-06 55.5 41 61.0
Zm00001eb217310 Zea mays HOM05D003978 ORTHO05D006033 1.3e-06 55.5 46 58.7
Atru.chr8.1765 Acer truncatum HOM05D003978 ORTHO05D000124 1.7e-06 55.1 46 54.3
Haze_16750 Corylus avellana HOM05D003978 ORTHO05D015758 2.2e-06 54.7 38 68.4
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 2.9e-06 54.3 46 56.5
Lalb_Chr19g0129391 Lupinus albus HOM05D003978 ORTHO05D015758 2.9e-06 54.3 37 64.9
Medtr7g013730 Medicago truncatula HOM05D000142 ORTHO05D000124 2.9e-06 54.3 41 53.7
Sabra08G0021900 Salix brachista HOM05D003978 ORTHO05D006033 2.9e-06 54.3 37 64.9
AagrBONN_evm.TU.Sc2ySwM_117.1827 Anthoceros agrestis HOM05D000142 ORTHO05D000124 3.8e-06 53.9 45 51.1
Cfa025054 Carpinus fangiana HOM05D000285 ORTHO05D000241 3.8e-06 53.9 40 52.5
Dinv23516 Davidia involucrata HOM05D000142 ORTHO05D000124 3.8e-06 53.9 47 53.2
Ah.08g211530 Amaranthus hybridus HOM05D003978 ORTHO05D006033 5.0e-06 53.5 46 50.0
Cpa.g.sc53.146 Carica papaya HOM05D003978 ORTHO05D015758 5.0e-06 53.5 37 70.3
Gohir.A11G033300 Gossypium hirsutum HOM05D000142 ORTHO05D000124 5.0e-06 53.5 47 42.6
Gohir.D11G036600 Gossypium hirsutum HOM05D000142 ORTHO05D000124 5.0e-06 53.5 47 42.6
Gorai.007G039400 Gossypium raimondii HOM05D000142 ORTHO05D000124 5.0e-06 53.5 47 42.6
CANSAT80G1834 Cannabis sativa HOM05D000142 ORTHO05D000124 6.5e-06 53.1 47 42.6
MELO3C012401.2 Cucumis melo HOM05D003978 ORTHO05D006033 6.5e-06 53.1 67 44.8
CsaV3_2G020900 Cucumis sativus L. HOM05D003978 ORTHO05D006033 6.5e-06 53.1 62 48.4
AL7G11250 Arabidopsis lyrata HOM05D000142 ORTHO05D000124 8.5e-06 52.8 40 57.5
Cc02_g10780 Coffea canephora HOM05D003978 ORTHO05D015758 8.5e-06 52.8 40 67.5
COL.COLO4_06855 Corchorus olitorius HOM05D000142 ORTHO05D000124 8.5e-06 52.8 47 40.4
Haze_16751 Corylus avellana HOM05D003978 ORTHO05D006033 8.5e-06 52.8 38 63.2
Nitab4.5_0003841g0080 Nicotiana tabacum HOM05D000142 ORTHO05D000124 8.5e-06 52.8 41 51.2
Oeu013852.1 Olea europaea HOM05D003978 ORTHO05D015758 8.5e-06 52.8 42 66.7


User provided reference genes

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