Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 3.1e-170 601.7 295 100.0
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.8e-146 522.7 295 87.1
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 3.8e-144 515.0 295 86.8
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 5.0e-144 514.6 295 86.1
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 9.4e-143 510.4 295 86.8
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 8.0e-142 507.3 295 86.1
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 8.8e-141 503.8 295 83.1
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 1.1e-138 496.9 295 83.7
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 2.4e-138 495.7 297 83.2
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 2.4e-138 495.7 295 83.4
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 2.4e-138 495.7 295 83.4
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 2.2e-136 489.2 295 82.7
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 5.0e-136 488.0 295 82.4
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 2.4e-122 442.6 296 74.0
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 8.6e-104 380.9 296 66.9
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 3.3e-103 379.0 297 64.3
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 7.3e-103 377.9 295 65.8
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.5e-103 377.5 296 64.9
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 1.2e-102 377.1 297 65.3
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.8e-102 375.9 296 65.5
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.7e-102 375.2 296 65.2
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 6.2e-102 374.8 298 64.8
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 8.0e-102 374.4 296 63.9
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.4e-100 369.0 295 64.1
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 1.7e-99 366.7 297 63.3
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 2.9e-99 365.9 300 63.3
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.9e-99 365.9 296 63.9
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 4.6e-97 358.6 295 61.4
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.0e-96 357.5 300 60.7
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 4.7e-94 348.6 296 60.5
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 6.2e-94 348.2 283 63.6
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 8.1e-94 347.8 297 60.6
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 8.1e-94 347.8 294 60.9
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 1.8e-93 346.7 297 60.9
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 4.0e-93 345.5 295 59.0
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 5.2e-93 345.1 296 59.1
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.2e-92 344.0 294 60.5
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.5e-92 343.6 235 68.9
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 3.4e-92 342.4 300 61.7
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 5.8e-92 341.7 324 56.5
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.3e-91 340.5 295 58.0
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 1.3e-91 340.5 297 59.6
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 3.7e-91 339.0 298 60.7
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 8.3e-91 337.8 295 58.6
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.4e-90 337.0 298 59.1
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.4e-90 337.0 298 59.1
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.4e-90 337.0 294 58.5
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 4.1e-90 335.5 291 57.0
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 4.1e-90 335.5 294 59.2
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 7.1e-90 334.7 280 61.8
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 9.2e-90 334.3 291 57.7
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.2e-89 334.0 294 59.2
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.6e-89 333.6 297 59.3
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 2.7e-89 332.8 294 58.8
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 2.7e-89 332.8 304 57.9
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 7.8e-89 331.3 297 58.2
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 7.8e-89 331.3 297 58.2
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.7e-88 330.1 294 59.5
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 3.0e-88 329.3 306 56.9
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 3.9e-88 328.9 296 58.8
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 6.6e-88 328.2 291 57.0
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 8.6e-88 327.8 299 58.2
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 8.6e-88 327.8 294 59.5
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.1e-87 327.4 264 64.8
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 1.1e-87 327.4 296 58.8
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 1.5e-87 327.0 298 55.4
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 1.5e-87 327.0 352 51.7
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.5e-87 326.2 267 63.3
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 7.3e-87 324.7 298 56.0
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 9.5e-87 324.3 292 57.2
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 2.8e-86 322.8 281 58.4
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.7e-86 322.0 267 61.8
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 1.8e-85 320.1 297 55.6
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 6.8e-85 318.2 298 56.7
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 8.9e-85 317.8 298 57.7
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.2e-84 317.4 291 55.3
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 2.6e-84 316.2 297 57.2
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 3.4e-84 315.8 286 57.7
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.8e-84 315.1 266 59.4
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.3e-83 313.9 339 52.8
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 2.9e-83 312.8 264 61.4
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 2.9e-83 312.8 317 53.3
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 2.9e-83 312.8 297 56.6
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 3.8e-83 312.4 299 56.2
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 6.4e-83 311.6 301 56.1
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 6.4e-83 311.6 229 65.9
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 2.4e-82 309.7 293 58.4
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 5.4e-82 308.5 295 54.6
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 9.2e-82 307.8 297 55.6
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.1e-81 306.6 259 59.5
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.1e-81 306.6 291 55.0
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.1e-81 306.6 256 62.1
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 4.6e-81 305.4 282 56.0
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 2.3e-80 303.1 283 56.9
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 5.3e-77 292.0 230 60.4
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 4.4e-76 288.9 206 67.5
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 1.3e-75 287.3 279 54.8
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 1.1e-74 284.3 295 51.5
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.9e-74 283.5 230 63.0
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 4.2e-74 282.3 207 65.2
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 4.2e-74 282.3 215 64.2
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.4e-74 282.0 301 51.8
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.1e-73 280.0 285 52.3
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.8e-73 278.1 230 61.7
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 5.6e-71 271.9 229 59.8
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 3.8e-67 259.2 260 54.2
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.9e-66 256.9 235 57.4
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.1e-61 241.1 284 45.8
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 8.4e-59 231.5 189 58.7
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.3e-56 223.4 230 55.2
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 1.5e-55 220.7 209 54.5
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 7.6e-52 208.4 218 53.2
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.7e-51 207.2 209 54.5
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 2.9e-51 206.5 239 51.9
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.9e-50 203.8 208 53.4
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 1.9e-50 203.8 300 38.3
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.2e-49 201.1 288 43.8
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 2.1e-49 200.3 253 43.5
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 2.3e-48 196.8 218 50.0
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 2.3e-48 196.8 148 66.2
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.5e-47 194.1 181 56.9
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 3.1e-45 186.4 243 44.4
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 1.0e-43 181.4 273 42.9
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 3.8e-43 179.5 130 65.4
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 7.2e-42 175.3 122 67.2
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.0e-39 167.2 298 38.6
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.7e-39 165.6 106 73.6
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.1e-37 161.4 209 45.9
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 1.2e-36 157.9 118 63.6
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 2.6e-36 156.8 170 51.8
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 6.3e-30 135.6 305 31.8
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.5e-28 129.4 143 54.5
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.9e-27 126.7 86 70.9
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 1.5e-26 124.4 203 43.3
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 5.5e-26 122.5 221 39.4
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 2.5e-18 97.1 177 39.5
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 5.5e-18 95.9 223 30.0
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 3.4e-15 86.7 256 27.0
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 2.2e-11 73.9 138 37.7
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 1.4e-08 64.7 114 37.7
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 1.3e-06 58.2 49 61.2


User provided reference genes

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