Gene: AT5G51170
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G51170
- Transcript Identifier AT5G51170.1
- Gene Type Coding gene
- Location Chr5 : 20793906-20795330 : negative
Gene Family Information
- ID HOM05D005564
- #Genes/#Species 138/95
- Phylogenetic origin
- ID ORTHO05D006872
- #Genes/#Species 137/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G51170.1
- uniprot Q9LU57
Descriptions
- Description U6 snRNA phosphodiesterase-like protein
- Computational description unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034477 | IBA IEA | Gene Ontology | U6 snRNA 3'-end processing | 1 |
| GO:0034477 | IEA | InterPro | U6 snRNA 3'-end processing | |
| GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis | |
| GO:0090503 | IEA | GOA Database | RNA phosphodiester bond hydrolysis, exonucleolytic |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004518 | IEA | Gene Ontology | nuclease activity | |
| GO:0004518 | IEA | InterPro | nuclease activity | |
| GO:0000175 | IEA | GOA Database | 3'-5'-exoribonuclease activity | |
| GO:0000175 | IBA | Gene Ontology | 3'-5'-exoribonuclease activity | 1 |
| GO:1990838 | IEA | GOA Database | poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends | |
| GO:0016787 | IEA | GOA Database | hydrolase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005576 | ISM | Gene Ontology | extracellular region | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027521 | U6 snRNA phosphodiesterase Usb1 |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |