Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 4.4e-203 711.1 354 100.0
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 9.7e-187 656.8 344 93.9
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 1.2e-179 633.3 344 90.4
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 2.6e-179 632.1 344 89.8
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 1.7e-178 629.4 345 90.4
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 2.2e-178 629.0 346 90.5
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 2.8e-178 628.6 344 89.5
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 4.1e-177 624.8 346 90.5
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 5.4e-177 624.4 346 90.8
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 7.0e-177 624.0 345 90.1
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 2.7e-176 622.1 347 90.2
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 7.7e-176 620.5 346 90.2
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 2.3e-172 609.0 344 87.2
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 1.2e-168 596.7 346 87.9
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 5.2e-156 554.7 351 79.5
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 3.6e-141 505.4 350 73.1
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 4.4e-139 498.4 350 72.3
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 2.9e-138 495.7 326 75.2
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 6.4e-138 494.6 350 72.0
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.1e-137 493.8 325 76.0
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 7.1e-137 491.1 325 75.7
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 3.5e-136 488.8 341 73.6
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.3e-135 486.1 326 75.5
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 5.1e-135 485.0 343 73.2
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.1e-134 483.8 332 73.5
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 1.1e-134 483.8 338 73.4
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 1.1e-134 483.8 317 75.7
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 1.5e-134 483.4 362 69.6
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 2.5e-134 482.6 380 66.3
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 7.3e-134 481.1 370 69.2
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 2.1e-133 479.6 366 66.9
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 1.1e-132 477.2 303 75.9
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 5.2e-132 474.9 335 72.8
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 6.9e-132 474.6 344 70.1
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 2.6e-131 472.6 347 70.3
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 3.4e-131 472.2 302 77.8
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 1.3e-130 470.3 361 67.3
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 2.2e-130 469.5 340 68.5
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 6.4e-130 468.0 367 66.8
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 3.2e-129 465.7 312 72.8
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 5.4e-129 464.9 302 73.5
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 6.0e-128 461.5 346 69.1
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 2.3e-127 459.5 340 67.9
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 2.3e-127 459.5 304 73.4
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 3.9e-127 458.8 325 72.9
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 1.5e-126 456.8 336 69.9
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 2.5e-126 456.1 336 68.2
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 1.3e-125 453.8 370 65.1
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 2.1e-125 453.0 355 65.4
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 2.1e-125 453.0 316 71.2
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 2.8e-125 452.6 358 64.8
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 3.1e-124 449.1 354 65.0
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 5.3e-124 448.4 363 63.9
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 6.9e-124 448.0 347 66.9
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 9.9e-123 444.1 362 65.5
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 1.3e-122 443.7 302 71.5
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 1.3e-122 443.7 305 71.1
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 1.7e-122 443.4 346 64.2
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 1.7e-122 443.4 357 64.7
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 1.7e-122 443.4 361 64.3
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 3.8e-122 442.2 346 66.8
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 1.1e-121 440.7 384 60.9
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 1.4e-121 440.3 348 65.5
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 1.9e-121 439.9 307 70.0
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 7.1e-121 438.0 307 69.7
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 2.1e-120 436.4 331 65.0
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 2.7e-120 436.0 346 64.2
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 3.5e-120 435.6 318 68.2
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 4.6e-120 435.3 370 61.4
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 2.3e-119 433.0 350 62.3
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 5.1e-119 431.8 322 64.9
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 6.7e-119 431.4 343 64.1
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 3.3e-118 429.1 367 60.2
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 3.3e-118 429.1 329 65.0
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 1.6e-117 426.8 303 66.3
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 4.0e-116 422.2 294 69.7
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 5.3e-116 421.8 303 68.0
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 6.9e-116 421.4 302 69.9
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 1.7e-114 416.8 312 64.1
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 7.4e-110 401.4 354 60.7
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 1.2e-107 394.0 264 73.5
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 1.0e-106 391.0 340 62.1
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 2.2e-106 389.8 365 55.6
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 4.8e-101 372.1 312 58.0
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 1.1e-100 370.9 354 54.2
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 6.9e-100 368.2 287 63.4
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.0e-98 364.4 306 59.2
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.0e-98 364.4 306 59.2
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 1.3e-98 364.0 348 52.9
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 1.9e-97 360.1 299 62.2
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 9.4e-97 357.8 303 59.4
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 3.6e-96 355.9 306 57.5
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 3.0e-95 352.8 249 68.7
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 6.7e-95 351.7 289 63.3
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 8.8e-95 351.3 230 73.0
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 2.5e-94 349.7 295 59.3
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 2.9e-90 336.3 309 54.7
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 7.9e-88 328.2 176 93.8
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 4.8e-85 318.9 379 48.5
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 1.0e-79 301.2 349 50.4
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 5.0e-74 282.3 169 79.9
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 1.9e-73 280.4 349 45.8
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 2.5e-73 280.0 179 76.5
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 4.8e-69 265.8 171 72.5
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 1.8e-68 263.8 249 55.8
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 3.8e-66 256.1 441 38.1
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 1.4e-63 247.7 388 39.2
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 4.4e-54 216.1 127 79.5
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 5.7e-54 215.7 168 63.1
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 2.6e-46 190.3 194 52.1
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 7.0e-36 155.6 123 64.2
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 1.5e-30 137.9 96 70.8
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 2.0e-22 110.9 312 29.5
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 3.9e-18 96.7 219 32.4
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 2.8e-16 90.5 57 77.2
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 1.2e-14 85.1 50 76.0
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 4.6e-11 73.2 157 28.7
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 5.6e-09 66.2 195 29.2
SalBow6G7050 Salvia bowleyana HOM05D007129 ORTHO05D008680 2.8e-08 63.9 109 37.6
Sopen03g032940 Solanum pennellii HOM05D007129 ORTHO05D008680 8.1e-08 62.4 169 30.2
Solyc03g113880.4 Solanum lycopersicum HOM05D007129 ORTHO05D008680 1.4e-07 61.6 169 29.6
Peaxi162Scf00017g02522 Petunia axillaris HOM05D007129 ORTHO05D008680 3.1e-07 60.5 116 35.3
CsaV3_1G008250 Cucumis sativus L. HOM05D007129 ORTHO05D008680 5.3e-07 59.7 247 27.1
PGSC0003DMG401024472 Solanum tuberosum HOM05D007129 ORTHO05D008680 5.3e-07 59.7 105 36.2
CAN.G853.11 Capsicum annuum HOM05D007129 ORTHO05D008680 6.9e-07 59.3 105 36.2
EL10Ac5g10824 Beta vulgaris HOM05D007129 ORTHO05D008680 1.5e-06 58.2 116 34.5
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 1.5e-06 58.2 105 36.2
TWI15G0302 Tripterygium wilfordii HOM05D007129 ORTHO05D008680 5.8e-06 56.2 105 35.2
MSTRG.9665 Avicennia marina HOM05D007129 ORTHO05D008680 7.6e-06 55.8 104 37.5
Oeu016337.1 Olea europaea HOM05D007129 ORTHO05D008680 7.6e-06 55.8 115 33.9
vmacro16590 Vaccinium macrocarpon HOM05D007129 ORTHO05D008680 9.9e-06 55.5 105 36.2


User provided reference genes

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