Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 3.2e-248 861.3 440 100.0
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 7.7e-234 813.5 445 94.2
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 5.0e-233 810.8 445 93.3
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 3.6e-231 804.7 445 93.3
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 2.0e-229 798.9 445 93.0
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 3.7e-228 794.7 440 92.7
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 8.3e-228 793.5 440 92.5
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 1.4e-227 792.7 440 92.0
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 3.1e-227 791.6 440 92.5
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 3.5e-226 788.1 448 91.7
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 4.7e-223 777.7 445 90.3
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 1.8e-222 775.8 470 86.2
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 4.0e-222 774.6 445 89.9
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.7e-220 769.2 444 89.4
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 2.4e-219 765.4 449 89.5
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 2.4e-219 765.4 449 89.5
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 3.3e-216 755.0 470 84.5
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 1.2e-215 753.1 445 88.3
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 7.5e-205 717.2 460 81.5
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.6e-191 672.9 442 78.3
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 2.2e-188 662.5 391 88.5
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 6.6e-185 651.0 453 75.5
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.6e-183 646.4 451 75.4
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 2.8e-183 645.6 456 75.0
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 8.1e-183 644.0 456 74.8
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 6.9e-182 641.0 451 75.2
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.9e-180 635.6 445 75.3
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 3.5e-178 628.6 454 72.7
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 7.9e-178 627.5 451 72.7
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 3.9e-177 625.2 449 72.6
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 9.6e-176 620.5 457 71.6
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 3.4e-173 612.1 450 70.9
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 6.4e-172 607.8 447 70.7
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.2e-171 605.5 444 71.2
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.1e-170 602.8 444 70.7
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.7e-170 602.4 448 71.4
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 6.0e-170 601.3 449 71.0
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 7.9e-170 600.9 451 70.7
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 2.3e-169 599.4 450 70.9
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.9e-169 598.6 452 69.9
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 3.9e-169 598.6 439 70.4
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 5.1e-169 598.2 450 70.7
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 9.6e-168 594.0 441 70.7
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 9.6e-168 594.0 451 70.7
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.3e-167 593.6 449 70.2
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.6e-167 593.2 452 71.0
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 2.8e-167 592.4 452 69.2
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 6.2e-167 591.3 441 69.8
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 3.4e-165 585.5 442 70.4
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 1.3e-164 583.6 451 69.6
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 4.9e-164 581.6 443 69.3
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.4e-163 580.1 455 70.1
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.9e-163 579.7 418 72.0
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 2.5e-163 579.3 450 70.4
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 2.1e-162 576.2 445 69.2
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 3.5e-162 575.5 438 68.7
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 4.6e-162 575.1 455 69.0
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 6.0e-162 574.7 444 70.0
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 6.0e-162 574.7 448 68.8
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 7.9e-162 574.3 440 69.1
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.3e-161 573.5 440 68.6
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.8e-161 573.2 448 69.4
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 2.3e-161 572.8 463 68.0
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 3.0e-161 572.4 437 70.0
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 3.0e-161 572.4 443 68.2
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 3.9e-161 572.0 446 69.3
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 1.1e-160 570.5 444 69.6
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.1e-160 570.5 440 68.9
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 1.1e-160 570.5 487 64.9
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 2.5e-160 569.3 440 68.6
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 3.3e-160 568.9 393 73.3
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 4.3e-160 568.5 444 68.9
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 5.7e-160 568.2 437 69.1
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 9.7e-160 567.4 443 69.5
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 1.6e-159 566.6 441 68.3
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.6e-159 566.6 444 68.7
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 3.7e-159 565.5 458 67.5
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 8.2e-159 564.3 452 67.9
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 1.1e-158 563.9 448 68.1
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.1e-158 562.4 448 66.7
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 6.9e-158 561.2 453 67.1
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 5.9e-157 558.1 451 66.3
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 1.0e-156 557.4 445 66.7
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 5.0e-156 555.1 469 64.8
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 4.2e-155 552.0 452 65.7
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 2.1e-154 549.7 455 66.6
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 2.1e-154 549.7 424 70.3
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 2.3e-153 546.2 451 67.0
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 6.7e-153 544.7 449 64.8
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 8.8e-153 544.3 452 66.6
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.1e-152 543.9 454 65.6
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 2.5e-152 542.7 439 66.3
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 9.7e-152 540.8 448 64.3
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 2.2e-151 539.7 463 67.4
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 4.8e-151 538.5 453 64.9
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 6.3e-151 538.1 451 65.9
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 5.3e-150 535.0 452 64.4
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 2.6e-149 532.7 446 65.0
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 3.4e-149 532.3 410 68.5
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 5.9e-149 531.6 496 61.3
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 4.2e-147 525.4 427 66.5
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 3.6e-146 522.3 452 63.5
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 6.1e-146 521.5 411 68.1
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.6e-144 516.2 448 61.6
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 4.4e-144 515.4 453 63.6
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.3e-143 513.8 446 63.9
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 1.8e-142 510.0 451 63.9
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 7.7e-141 504.6 449 62.4
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 5.0e-140 501.9 461 61.6
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 2.5e-139 499.6 447 62.2
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 3.7e-135 485.7 453 60.3
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.7e-132 476.9 421 62.5
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 9.4e-131 471.1 452 60.2
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 2.2e-127 459.9 425 60.5
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 1.4e-126 457.2 451 59.6
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 2.0e-125 453.4 416 61.5
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 3.5e-125 452.6 342 73.4
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 4.5e-125 452.2 368 65.8
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 2.5e-123 446.4 408 60.8
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 9.4e-123 444.5 451 57.4
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.0e-116 424.5 507 50.5
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 4.7e-114 415.6 468 51.7
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 8.0e-114 414.8 338 63.0
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.8e-113 413.7 472 50.8
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 1.8e-113 413.7 392 58.7
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 3.0e-113 412.9 481 54.1
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 8.9e-113 411.4 342 64.3
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 1.1e-110 404.4 418 56.0
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 7.3e-107 391.7 501 46.9
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 2.4e-102 376.7 244 86.5
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 7.0e-102 375.2 441 51.2
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.0e-100 371.3 486 44.9
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 9.5e-91 338.2 240 69.2
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 3.6e-90 336.3 370 51.1
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 3.5e-77 293.1 450 41.8
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 7.6e-72 275.4 519 36.8
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 9.9e-72 275.0 391 41.7
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 3.8e-71 273.1 177 78.0
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 2.7e-69 266.9 479 40.1
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 3.9e-68 263.1 181 74.0
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 2.5e-67 260.4 354 46.0
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 7.3e-67 258.8 182 73.6
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 4.9e-63 246.1 175 72.0
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 1.3e-55 221.5 390 36.9
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 2.7e-53 213.8 129 79.8
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 5.3e-49 199.5 256 47.3
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 3.2e-46 190.3 385 36.9
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.5e-40 171.4 262 40.1
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 9.4e-38 162.2 228 46.5
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 1.3e-34 151.8 175 53.1
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 2.2e-34 151.0 117 61.5
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 2.2e-31 141.0 123 73.2
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 8.5e-31 139.0 352 35.2
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 4.4e-27 126.7 89 64.0
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 5.7e-27 126.3 136 49.3
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 3.5e-24 117.1 131 56.5
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 2.2e-23 114.4 203 42.4
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 5.5e-22 109.8 132 56.1
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.6e-21 108.2 137 50.4
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 3.6e-21 107.1 144 48.6
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 4.0e-20 103.6 167 43.7
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 2.7e-16 90.9 300 26.3
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 4.5e-16 90.1 57 70.2
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 6.5e-15 86.3 99 46.5
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 4.2e-14 83.6 53 75.5
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 6.8e-12 76.3 81 56.8
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 5.4e-09 66.6 109 35.8
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 3.5e-08 63.9 42 71.4
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 7.7e-08 62.8 43 74.4
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 8.5e-07 59.3 50 60.0
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 1.5e-06 58.5 42 71.4
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 1.5e-06 58.5 40 75.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.2e-06 57.4 32 87.5


User provided reference genes

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