Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 4.3e-206 721.1 364 100.0
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.1e-184 649.0 364 89.8
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 2.6e-182 642.1 374 87.7
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 4.4e-182 641.3 364 89.3
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 1.2e-168 596.7 364 80.8
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 2.1e-168 595.9 364 80.5
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 2.6e-166 589.0 363 81.0
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 4.4e-166 588.2 364 82.1
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.3e-165 586.6 364 81.9
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.7e-165 586.3 357 80.7
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 3.7e-165 585.1 364 80.8
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 6.3e-165 584.3 364 81.3
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 6.3e-165 584.3 380 78.4
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 1.4e-164 583.2 364 81.3
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 2.4e-164 582.4 364 79.4
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 5.3e-164 581.3 362 80.1
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 9.1e-164 580.5 364 81.0
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 5.9e-163 577.8 388 75.8
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.3e-162 576.6 364 81.0
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.3e-162 576.6 364 81.0
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.3e-162 576.6 364 81.0
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 6.5e-162 574.3 364 79.1
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 1.1e-161 573.5 364 79.9
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.5e-161 573.2 364 78.8
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 2.1e-160 569.3 364 76.4
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 8.0e-160 567.4 307 90.9
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 1.8e-159 566.2 365 79.5
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 5.2e-159 564.7 364 77.7
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.2e-158 563.5 366 79.2
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 4.8e-157 558.1 364 77.7
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 6.3e-157 557.8 364 77.5
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.1e-156 557.0 367 77.1
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 2.4e-156 555.8 367 77.7
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 7.0e-156 554.3 364 76.9
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.0e-155 552.7 364 75.8
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 1.3e-154 550.1 364 76.6
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 2.3e-154 549.3 364 76.6
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 6.6e-154 547.7 364 75.3
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.1e-153 547.0 368 76.1
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.5e-153 546.6 364 76.1
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 3.3e-153 545.4 364 75.3
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 5.5e-153 544.7 367 77.7
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 3.6e-152 542.0 364 75.8
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 6.1e-152 541.2 363 75.5
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 8.0e-152 540.8 364 74.7
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 8.0e-152 540.8 364 74.5
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 8.0e-152 540.8 364 74.5
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.8e-151 539.7 365 75.6
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 8.9e-151 537.3 364 75.0
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 1.5e-150 536.6 365 74.5
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 2.6e-150 535.8 364 76.1
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 3.4e-150 535.4 365 74.5
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 3.4e-150 535.4 366 76.0
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 1.3e-149 533.5 365 74.0
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 1.7e-149 533.1 369 72.9
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 2.8e-149 532.3 365 76.2
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 4.9e-149 531.6 365 74.0
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 5.9e-147 524.6 364 73.9
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 2.3e-146 522.7 364 73.6
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.9e-146 522.3 364 73.6
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.5e-145 520.0 337 76.3
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 4.3e-145 518.5 363 73.8
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.6e-144 516.5 364 73.4
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.3e-143 512.7 364 75.0
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 6.8e-143 511.1 365 72.1
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 4.4e-142 508.4 356 73.3
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 2.2e-141 506.1 364 71.2
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.2e-141 506.1 361 71.7
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 2.9e-141 505.8 366 71.0
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 4.9e-141 505.0 361 71.7
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 2.4e-140 502.7 364 70.9
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 3.2e-140 502.3 364 70.3
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 1.7e-138 496.5 365 71.8
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.9e-137 493.0 366 72.1
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 4.3e-137 491.9 367 69.8
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 1.6e-136 490.0 365 69.3
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 2.8e-136 489.2 364 68.7
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 6.2e-136 488.0 364 68.7
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 8.0e-136 487.6 364 68.4
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 8.0e-136 487.6 366 69.4
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 1.8e-135 486.5 365 69.6
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.8e-135 486.5 364 70.9
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 4.0e-135 485.3 366 69.1
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 4.0e-135 485.3 366 69.1
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 8.9e-135 484.2 320 77.5
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 4.4e-134 481.9 367 68.7
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 9.8e-134 480.7 365 70.4
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.7e-133 479.9 372 68.3
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 8.3e-133 477.6 390 64.9
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 2.4e-132 476.1 391 64.7
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.0e-130 469.2 365 68.8
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 7.3e-129 464.5 333 73.0
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 4.4e-126 455.3 366 63.7
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.5e-118 430.3 341 64.5
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.6e-118 429.5 245 89.0
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 7.6e-118 427.9 379 59.9
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 6.4e-117 424.9 277 76.9
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 8.4e-117 424.5 378 60.3
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.1e-116 424.1 302 72.5
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.4e-116 423.7 378 63.2
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 2.7e-115 419.5 364 64.6
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 2.3e-114 416.4 369 62.6
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 6.6e-114 414.8 357 61.3
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.9e-113 413.3 362 61.6
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 2.0e-110 403.3 360 60.8
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 7.8e-107 391.3 277 74.4
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 6.6e-106 388.3 386 52.3
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 3.8e-101 372.5 310 60.3
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 4.8e-88 328.9 392 47.7
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.6e-83 313.9 364 52.7
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 7.9e-83 311.6 360 47.5
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 5.1e-82 308.9 215 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 5.9e-78 295.4 422 43.6
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.0e-74 284.6 308 52.9
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 4.1e-71 272.7 173 78.6
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 6.9e-71 271.9 167 80.8
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 1.2e-67 261.2 198 68.2
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 3.3e-65 253.1 196 66.8
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.1e-63 248.1 214 61.7
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 1.5e-62 244.2 177 72.3
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.8e-55 220.7 161 71.4
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 8.5e-53 211.8 122 85.2
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.1e-51 207.2 122 83.6
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.2e-49 201.4 146 73.3
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 9.1e-47 191.8 165 63.0
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 3.5e-46 189.9 309 41.4
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 1.5e-44 184.5 200 52.0
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.0e-41 174.1 122 73.8
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 2.6e-41 173.7 251 43.0
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 2.2e-40 170.6 280 42.1
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.0e-37 161.8 141 61.7
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.5e-33 147.9 186 43.5
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 1.3e-32 144.8 138 58.7
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 7.0e-31 139.0 114 63.2
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.1e-27 127.5 72 83.3
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 5.2e-26 122.9 87 69.0
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.0e-21 108.6 72 75.0
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.9e-20 104.4 77 63.6
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 6.2e-19 99.4 387 22.7
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-16 90.5 134 38.1
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 6.2e-11 72.8 411 23.1


User provided reference genes

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