Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.3e-125 452.2 223 100.0
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 2.5e-116 422.2 223 91.0
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 7.4e-116 420.6 225 92.0
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.3e-112 409.8 223 88.3
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.6e-110 402.9 223 87.9
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 7.9e-110 400.6 223 87.4
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 5.1e-109 397.9 223 84.8
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 9.7e-108 393.7 219 84.9
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.8e-106 389.4 222 82.9
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 4.1e-106 388.3 223 83.0
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 6.9e-106 387.5 223 81.6
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 6.9e-106 387.5 215 84.2
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 6.9e-106 387.5 215 84.2
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.5e-105 386.3 215 85.1
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 2.0e-105 386.0 223 83.4
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 2.0e-105 386.0 223 81.2
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 5.9e-105 384.4 223 80.7
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 5.9e-105 384.4 223 82.1
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.0e-104 383.6 223 81.6
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.0e-104 383.6 215 82.3
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 2.9e-104 382.1 224 80.8
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 8.5e-104 380.6 223 80.3
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.4e-103 379.8 224 79.5
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 4.2e-103 378.3 224 82.1
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 4.7e-102 374.8 215 81.4
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 7.9e-102 374.0 219 79.0
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.9e-102 374.0 222 78.8
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.8e-101 372.9 260 71.2
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.8e-101 372.9 260 71.2
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 2.3e-101 372.5 223 77.6
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 2.3e-101 372.5 217 80.2
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 2.6e-100 369.0 223 78.0
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 4.4e-100 368.2 238 77.3
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 7.4e-100 367.5 223 75.3
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 9.7e-100 367.1 224 77.7
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 2.2e-99 365.9 251 74.1
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.7e-99 365.2 224 77.2
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 6.3e-99 364.4 223 74.9
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.2e-99 364.0 224 76.8
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-98 363.6 224 76.8
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 3.1e-98 362.1 214 76.2
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 4.1e-98 361.7 218 76.1
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 9.1e-98 360.5 217 80.2
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 5.0e-96 354.8 223 79.4
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.5e-95 353.2 216 78.2
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.9e-95 352.8 216 77.3
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 3.2e-95 352.1 217 77.4
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 4.2e-95 351.7 216 76.9
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.2e-95 351.7 225 75.1
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 7.2e-95 350.9 223 72.6
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.2e-94 350.1 215 76.7
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.6e-94 349.7 223 75.8
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 6.1e-94 347.8 223 71.3
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.4e-93 346.7 216 75.9
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.4e-93 346.7 223 73.5
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.8e-93 346.3 223 72.2
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.8e-93 346.3 215 74.0
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 2.3e-93 345.9 216 76.4
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 3.0e-93 345.5 216 74.5
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 5.7e-92 341.3 217 73.3
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.7e-91 339.7 252 67.1
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.4e-90 336.7 218 70.2
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.8e-90 336.3 202 76.7
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 3.1e-90 335.5 215 72.6
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 4.1e-90 335.1 215 73.0
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 4.1e-90 335.1 216 72.2
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 5.3e-90 334.7 218 70.6
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.2e-89 333.6 215 74.9
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.6e-89 333.2 215 71.6
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 2.0e-89 332.8 221 69.7
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 2.7e-89 332.4 215 70.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 4.5e-89 331.6 215 72.6
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 4.5e-89 331.6 215 72.6
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 5.9e-89 331.3 217 71.4
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 7.7e-89 330.9 215 71.2
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 7.7e-89 330.9 217 71.9
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.0e-88 330.5 265 61.5
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 2.9e-88 328.9 215 70.2
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.8e-88 328.6 217 70.0
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 5.0e-88 328.2 215 71.2
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 8.5e-88 327.4 218 68.8
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.1e-87 327.0 236 67.4
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 9.4e-87 323.9 217 67.7
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.1e-86 322.8 215 67.9
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.1e-86 322.8 215 67.9
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.1e-86 322.8 215 67.9
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 2.7e-86 322.4 215 69.3
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.0e-85 320.5 216 67.1
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.0e-85 318.5 218 66.1
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 2.0e-84 316.2 210 71.4
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 2.0e-84 316.2 210 71.0
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.0e-84 316.2 216 67.6
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-84 315.5 221 63.3
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 5.7e-84 314.7 215 67.0
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 5.4e-82 308.1 215 64.7
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 9.1e-82 307.4 202 69.8
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.7e-80 303.1 216 68.1
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.1e-79 300.4 215 63.7
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.5e-79 300.1 180 77.2
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 3.2e-79 298.9 218 67.9
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.0e-78 294.3 215 64.2
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 4.4e-76 288.5 225 59.1
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 4.4e-76 288.5 170 83.5
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.4e-76 288.5 216 62.0
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 3.7e-75 285.4 170 79.4
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.9e-72 275.8 216 61.6
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.9e-71 273.1 219 53.0
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 4.3e-71 271.9 219 56.6
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 7.3e-71 271.2 173 75.7
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.6e-70 270.0 168 76.2
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.6e-70 270.0 168 76.2
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.8e-70 269.2 169 74.6
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 4.0e-69 265.4 225 62.2
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-67 260.0 215 59.1
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.1e-66 257.3 189 66.7
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-66 257.3 185 64.9
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.1e-66 257.3 189 61.9
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.3e-64 250.4 213 53.5
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.0e-64 249.2 221 55.7
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.9e-63 246.5 141 80.9
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 5.6e-63 245.0 210 52.9
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 9.5e-63 244.2 136 84.6
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-60 237.3 210 55.2
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 1.7e-59 233.4 213 52.6
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 2.9e-59 232.6 142 76.8
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.9e-59 232.6 169 63.9
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-57 227.3 165 65.5
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.6e-54 216.9 155 63.9
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 4.0e-53 212.2 171 58.5
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 2.0e-52 209.9 213 47.9
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.6e-52 209.5 208 45.7
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 4.4e-52 208.8 151 66.2
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 5.8e-52 208.4 127 78.0
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-51 207.2 143 67.8
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.1e-50 204.1 192 49.0
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.6e-49 200.3 203 49.3
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.7e-48 196.8 218 40.8
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.6e-48 194.5 166 55.4
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 6.2e-46 188.3 145 60.7
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.2e-44 184.1 131 64.1
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 2.2e-43 179.9 128 71.9
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 2.9e-43 179.5 172 54.1
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 6.6e-40 168.3 123 63.4
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-38 163.7 136 57.4
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.2e-37 158.7 133 54.9
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-36 156.4 114 63.2
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 3.3e-31 139.4 101 62.4
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-24 117.5 143 45.5
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.5e-23 114.0 90 61.1
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.6e-22 110.5 83 68.7
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 6.9e-21 105.1 74 63.5
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 9.0e-21 104.8 52 86.5
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-20 104.4 81 55.6
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 5.8e-20 102.1 130 42.3
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 6.7e-16 88.6 52 71.2
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-13 80.1 64 57.8
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 3.1e-13 79.7 97 45.4
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 6.9e-13 78.6 67 55.2
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 3.2e-10 69.7 55 65.5
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 3.2e-10 69.7 55 65.5
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 5.5e-10 68.9 54 66.7


User provided reference genes

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