Gene: AT2G28020
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G28020
- Transcript Identifier AT2G28020.1
- Gene Type Coding gene
- Location Chr2 : 11933728-11933940 : positive
Gene Family Information
- ID HOM05D001514
- #Genes/#Species 419/100
- Phylogenetic origin
- ID ORTHO05D005209
- #Genes/#Species 162/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT2G28020.1
- uniprot Q8S8F0
Descriptions
- Description mediator of RNA polymerase II transcription subunit
- Computational description BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of subunit 20 of Mediator complex (TAIR:AT2G28230.1); Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006357 | IEA | GOA Database | regulation of transcription by RNA polymerase II | |
| GO:0006357 | IBA | Gene Ontology | regulation of transcription by RNA polymerase II | 1 |
| GO:0006357 | IEA | InterPro | regulation of transcription by RNA polymerase II | |
| GO:0045893 | IEA | GOA Database | positive regulation of transcription, DNA-templated | |
| GO:0006383 | ISO | PLAZA Homology (enrichment) | transcription by RNA polymerase III | HOM05D001514 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003713 | IBA | Gene Ontology | transcription coactivator activity | 1 |
| GO:0003712 | IEA | GOA Database | transcription coregulator activity | |
| GO:0003712 | IEA | InterPro | transcription coregulator activity | |
| GO:0003677 | ISO | PLAZA Homology (enrichment) | DNA binding | HOM05D001514 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0016592 | IEA | GOA Database | mediator complex | |
| GO:0016592 | IBA | Gene Ontology | mediator complex | 1 |
| GO:0016592 | IEA | InterPro | mediator complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005666 | ISO | PLAZA Homology (enrichment) | RNA polymerase III complex | HOM05D001514 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013921 | Mediator complex, subunit Med20 |
| Mapman id | Description |
|---|---|
| 15.3.4.4.1.7 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED20 |