Gene: AT4G09070

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G09070
  • Transcript Identifier AT4G09070.1
  • Gene Type Coding gene
  • Location Chr4 : 5802308-5803392 : positive

Gene Family Information

  • ID HOM05D001514
  • #Genes/#Species 419/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G09070.1
  • uniprot Q9M0S0

Descriptions

  • Description TATA-binding related factor (TRF) of subunit 20 of Mediator complex
  • Computational description TATA-binding related factor (TRF) of subunit 20 of Mediator complex; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med20 (InterPro:IPR013921); BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of subunit 20 of Mediator complex (TAIR:AT2G28230.1); Has 80 Blast hits to 80 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IEA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II1
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0045893
IEA
GOA Databasepositive regulation of transcription, DNA-templated
GO:0006383
ISO
PLAZA Homology (enrichment)transcription by RNA polymerase III HOM05D001514

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003713
IBA
Gene Ontologytranscription coactivator activity1
GO:0003712
IEA
GOA Databasetranscription coregulator activity
GO:0003712
IEA
InterProtranscription coregulator activity
GO:0003677
ISO
PLAZA Homology (enrichment)DNA binding HOM05D001514

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0016592
IEA
GOA Databasemediator complex
GO:0016592
IBA
Gene Ontologymediator complex1
GO:0016592
IEA
InterPromediator complex
GO:0005666
ISO
PLAZA Homology (enrichment)RNA polymerase III complex HOM05D001514

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013921 Mediator complex, subunit Med20
Mapman id Description
15.3.4.4.1.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED20