Gene: Sopen10g024880
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen10g024880
- Transcript Identifier Sopen10g024880.1
- Gene Type Coding gene
- Location Spenn-ch10 : 67174063-67196901 : negative
Gene Family Information
- ID HOM05D000004
- #Genes/#Species 19584/91
- Phylogenetic origin
- ID ORTHO05D000002
- #Genes/#Species 15655/89
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen10g024880.1
Descriptions
- Description Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), TATA-binding related factor (TRF) of subunit 20 of Mediator complex | FUNCTIONS IN: RNA polymerase II transcription mediator activity | INVOLVED IN: regulation of transcription from RNA polymerase II promoter | LOCATED IN: mediator complex | CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med20 | BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of subunit 20 of Mediator complex
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006357 | IEA | InterPro | regulation of transcription by RNA polymerase II |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003676 | IEA | InterPro | nucleic acid binding | |
GO:0008270 | IEA | InterPro | zinc ion binding | |
GO:0003712 | IEA | InterPro | transcription coregulator activity |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0016592 | IEA | InterPro | mediator complex |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
15.3.4.4.1.7 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED20 |