Gene: Solyc10g049550.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc10g049550.3
- Transcript Identifier Solyc10g049550.3.1
- Gene Type Coding gene
- Location SL4.0ch10 : 45115202-45115968 : negative
Gene Family Information
- ID HOM05D001514
- #Genes/#Species 419/100
- Phylogenetic origin
- ID ORTHO05D005209
- #Genes/#Species 162/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc10g049550.3.1
- uniprot A0A3Q7IFS9
- gene_id Solyc10g049550
Descriptions
- Description Mediator of RNA polymerase II transcription subunit 20 (AHRD V3.3 *-* A0A2G3BNZ9_CAPCH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045944 | ISO | PLAZA Integrative Orthology | positive regulation of transcription by RNA polymerase II | AT2G28230 |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT2G28230 |
| GO:2000031 | ISO | PLAZA Integrative Orthology | regulation of salicylic acid mediated signaling pathway | AT2G28230 |
| GO:0006383 | ISO | PLAZA Homology (enrichment) | transcription by RNA polymerase III | HOM05D001514 |
| GO:1900150 | ISO | PLAZA Integrative Orthology | regulation of defense response to fungus | AT2G28230 |
| GO:0006357 | IBA IEA | GOA Database | regulation of transcription by RNA polymerase II | |
| GO:0006357 | IEA | InterPro | regulation of transcription by RNA polymerase II | |
| GO:0045893 | IEA | GOA Database | positive regulation of transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003713 | IBA | GOA Database | transcription coactivator activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G28230 |
| GO:0003677 | ISO | PLAZA Homology (enrichment) | DNA binding | HOM05D001514 |
| GO:0003712 | IEA | GOA Database | transcription coregulator activity | |
| GO:0003712 | IEA | InterPro | transcription coregulator activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005666 | ISO | PLAZA Homology (enrichment) | RNA polymerase III complex | HOM05D001514 |
| GO:0016592 | IBA IEA | GOA Database | mediator complex | |
| GO:0016592 | IEA | InterPro | mediator complex | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013921 | Mediator complex, subunit Med20 |
| Mapman id | Description |
|---|---|
| 15.3.4.4.1.7 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED20 |