Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G050800 Theobroma cacao HOM05D007020 ORTHO05D008935 5.5e-189 664.1 321 100.0
Thecc.08G051000 Theobroma cacao HOM05D007020 ORTHO05D008935 7.7e-82 308.1 236 68.6
Duzib093G0969 Durio zibethinus HOM05D007020 ORTHO05D008935 1.2e-79 300.8 235 68.9
Gohir.A05G183200 Gossypium hirsutum HOM05D007020 ORTHO05D008935 1.2e-77 294.3 265 61.5
Gohir.D05G186100 Gossypium hirsutum HOM05D007020 ORTHO05D008935 1.8e-75 287.0 237 65.0
Gorai.009G191500 Gossypium raimondii HOM05D000059 ORTHO05D008935 1.8e-75 287.0 237 65.0
Manes.06G014100 Manihot esculenta HOM05D007020 ORTHO05D008935 1.7e-68 263.8 236 59.7
THA.LOC104809629 Tarenaya hassleriana HOM05D007020 ORTHO05D008935 1.8e-67 260.4 235 58.3
Haze_22697 Corylus avellana HOM05D007020 ORTHO05D008935 9.1e-67 258.1 246 58.1
BcaC08g47303 Brassica carinata HOM05D007020 ORTHO05D008935 1.7e-65 253.8 230 59.1
Rhsim06G0012300 Rhododendron simsii HOM05D007020 ORTHO05D008935 1.7e-65 253.8 246 56.5
TWI36G0910 Tripterygium wilfordii HOM05D007020 ORTHO05D008935 1.7e-65 253.8 234 57.7
QL02p012883 Quercus lobata HOM05D007020 ORTHO05D008935 2.9e-65 253.1 242 55.8
Potri.002G016800 Populus trichocarpa HOM05D007020 ORTHO05D008935 3.8e-65 252.7 236 58.5
GSVIVG01008746001 Vitis vinifera HOM05D007020 ORTHO05D008935 3.8e-65 252.7 240 57.9
Sabra02G0013400 Salix brachista HOM05D007020 ORTHO05D008935 5.0e-65 252.3 238 58.4
Dinv31889 Davidia involucrata HOM05D007020 ORTHO05D008935 6.6e-65 251.9 246 56.5
Eucgr.F03712 Eucalyptus grandis HOM05D007020 ORTHO05D008935 8.6e-65 251.5 246 56.5
C06p49960 Brassica napus HOM05D007020 ORTHO05D008935 1.5e-64 250.8 242 57.4
Cpa.g.sc26.268 Carica papaya HOM05D007020 ORTHO05D008935 1.5e-64 250.8 234 56.8
PGR031G0358 Punica granatum HOM05D007020 ORTHO05D008935 1.6e-63 247.3 248 54.8
vmacro21850 Vaccinium macrocarpon HOM05D007020 ORTHO05D008935 1.6e-63 247.3 246 54.9
Lj4A801T43 Lonicera japonica HOM05D007020 ORTHO05D008935 2.1e-63 246.9 236 57.6
CAN.G311.66 Capsicum annuum HOM05D007020 ORTHO05D008935 4.7e-63 245.7 239 54.8
Nitab4.5_0003030g0130 Nicotiana tabacum HOM05D007020 ORTHO05D008935 4.7e-63 245.7 246 54.1
Thhalv10018588m.g Eutrema salsugineum HOM05D007020 ORTHO05D008935 1.4e-62 244.2 235 57.9
BolC6t40035H Brassica oleracea HOM05D007020 ORTHO05D008935 1.8e-62 243.8 232 58.2
Carub.0002s2293 Capsella rubella HOM05D007020 ORTHO05D008935 2.3e-62 243.4 236 58.1
COL.COLO4_26091 Corchorus olitorius HOM05D007020 ORTHO05D008935 4.0e-62 242.7 232 61.2
Solyc04g081920.3 Solanum lycopersicum HOM05D007020 ORTHO05D008935 5.2e-62 242.3 246 52.8
Migut.C00895 Erythranthe guttata HOM05D007020 ORTHO05D008935 1.5e-61 240.7 237 54.9
PGSC0003DMG400009884 Solanum tuberosum HOM05D007020 ORTHO05D008935 2.0e-61 240.4 246 52.0
TAR633G1459 Trochodendron aralioides HOM05D007020 ORTHO05D008935 3.4e-61 239.6 246 52.8
Ciclev10001736m.g Citrus clementina HOM05D007020 ORTHO05D008935 4.4e-61 239.2 228 57.0
A07p41540 Brassica napus HOM05D007020 ORTHO05D008935 7.5e-61 238.4 231 57.1
BraA07t31686Z Brassica rapa HOM05D007020 ORTHO05D008935 7.5e-61 238.4 231 57.1
PSO170G4315 Papaver somniferum HOM05D007020 ORTHO05D008935 7.5e-61 238.4 248 51.6
BcaC08g47097 Brassica carinata HOM05D007020 ORTHO05D008935 1.3e-60 237.7 231 56.3
Sc26g0004460 Simmondsia chinensis HOM05D007020 ORTHO05D008935 1.3e-60 237.7 234 56.0
DCAR_022941 Daucus carota HOM05D007020 ORTHO05D008935 1.7e-60 237.3 246 52.8
TAR376G1009 Trochodendron aralioides HOM05D007020 ORTHO05D008935 2.2e-60 236.9 246 52.8
HanXRQChr05g0146601 Helianthus annuus HOM05D007020 ORTHO05D008935 2.8e-60 236.5 245 52.7
CARHR069580 Cardamine hirsuta HOM05D007020 ORTHO05D008935 3.7e-60 236.1 233 56.7
Peaxi162Scf00174g00717 Petunia axillaris HOM05D007020 ORTHO05D008935 3.7e-60 236.1 244 54.1
Actinidia17018 Actinidia chinensis HOM05D007020 ORTHO05D008935 6.3e-60 235.3 191 65.4
Cc10_g01170 Coffea canephora HOM05D007020 ORTHO05D008935 1.1e-59 234.6 248 51.2
ClCG08G014040 Citrullus lanatus HOM05D007020 ORTHO05D008935 2.4e-59 233.4 238 55.0
Aa31LG4G6160 Aethionema arabicum HOM05D000059 ORTHO05D000128 1.2e-58 231.1 260 50.0
Atru.chr13.224 Acer truncatum HOM05D007020 ORTHO05D008935 1.6e-58 230.7 220 57.7
MELO3C011342.2 Cucumis melo HOM05D007020 ORTHO05D008935 1.6e-58 230.7 238 54.6
AT1G76050 Arabidopsis thaliana HOM05D007020 ORTHO05D008935 2.0e-58 230.3 238 54.6
AL2G36070 Arabidopsis lyrata HOM05D007020 ORTHO05D008935 3.5e-58 229.6 237 54.9
CsaV3_2G024410 Cucumis sativus L. HOM05D007020 ORTHO05D008935 3.5e-58 229.6 238 54.2
Sed0026116 Sechium edule HOM05D007020 ORTHO05D008935 3.5e-58 229.6 239 54.0
SGA_v2.0_scaffold96G28944 Striga asiatica HOM05D007020 ORTHO05D008935 4.5e-58 229.2 247 52.6
AUR62013887 Chenopodium quinoa HOM05D007020 ORTHO05D008935 7.8e-58 228.4 243 52.3
Aqoxy6G02012 Aquilegia oxysepala HOM05D007020 ORTHO05D008935 2.9e-57 226.5 250 50.4
Ah.11g040270 Amaranthus hybridus HOM05D007020 ORTHO05D008935 3.9e-57 226.1 241 50.6
ECA232G4433 Erigeron canadensis HOM05D007020 ORTHO05D008935 3.9e-57 226.1 242 52.1
AUR62036707 Chenopodium quinoa HOM05D007020 ORTHO05D008935 5.0e-57 225.7 243 50.6
Medtr3g114540 Medicago truncatula HOM05D007020 ORTHO05D008935 1.1e-56 224.6 246 50.8
CDE02G2299 Ceratophyllum demersum HOM05D000059 ORTHO05D008935 3.3e-56 223.0 244 52.5
ATR0661G229 Amborella trichopoda HOM05D007020 ORTHO05D008935 4.3e-56 222.6 259 47.5
Hund05155 Selenicereus undatus HOM05D007020 ORTHO05D008935 9.5e-56 221.5 245 49.4
Os06g0717400 Oryza sativa ssp. japonica HOM05D007020 ORTHO05D008935 2.1e-55 220.3 246 50.4
TPR.G38245 Trifolium pratense HOM05D007020 ORTHO05D008935 4.7e-55 219.2 246 50.8
EL10Ac1g02092 Beta vulgaris HOM05D007020 ORTHO05D008935 6.1e-55 218.8 244 49.2
arahy.Tifrunner.gnm1.ann1.YGS75T Arachis hypogaea HOM05D007020 ORTHO05D008935 8.0e-55 218.4 245 49.0
Phvul.009G019500 Phaseolus vulgaris HOM05D007020 ORTHO05D008935 1.4e-54 217.6 244 48.8
arahy.Tifrunner.gnm1.ann1.W20NI2 Arachis hypogaea HOM05D007020 ORTHO05D008935 1.8e-54 217.2 245 48.6
Psat5g012400 Pisum sativum HOM05D007020 ORTHO05D008935 1.8e-54 217.2 245 48.2
CiPaw.07G144000 Carya illinoinensis HOM05D007020 ORTHO05D008935 3.1e-54 216.5 232 53.0
Lj1g0017386 Lotus japonicus HOM05D007020 ORTHO05D008935 4.0e-54 216.1 241 48.5
Ca_15469_v3 Cicer arietinum L. HOM05D007020 ORTHO05D008935 5.2e-54 215.7 246 49.6
Glyma.04G020900 Glycine max HOM05D007020 ORTHO05D008935 2.0e-53 213.8 247 47.8
Lalb_Chr08g0246281 Lupinus albus HOM05D007020 ORTHO05D008935 2.0e-53 213.8 244 48.0
VMungo1309G1583 Vigna mungo HOM05D007020 ORTHO05D008935 2.0e-53 213.8 244 48.4
HPP92_004932 Vanilla planifolia HOM05D007020 ORTHO05D008935 2.0e-50 203.8 243 47.3
SEGI_18542 Sequoiadendron giganteum HOM05D007020 ORTHO05D008935 6.0e-50 202.2 246 45.5
Oeu014023.1 Olea europaea HOM05D007020 ORTHO05D008935 2.5e-48 196.8 349 38.1
Lsat_1_v5_gn_0_761 Lactuca sativa HOM05D007020 ORTHO05D008935 1.1e-46 191.4 216 49.5
MBI17_g14568_MAGBIO Magnolia biondii HOM05D007020 ORTHO05D008935 5.2e-46 189.1 248 46.0
Pp3c21_5880 Physcomitrium patens HOM05D007020 ORTHO05D008935 1.3e-41 174.5 263 40.7
Cfa014002 Carpinus fangiana HOM05D007020 ORTHO05D008935 1.1e-40 171.4 214 48.6
AagrBONN_evm.TU.Sc2ySwM_228.144 Anthoceros agrestis HOM05D007020 ORTHO05D008935 1.8e-38 164.1 267 37.1
SMO169G0131 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 1.8e-38 164.1 251 40.6
Hma1.2p1_1598F.1_g292900 Hydrangea macrophylla HOM05D007020 ORTHO05D008935 2.3e-38 163.7 201 46.8
SHI08019 Sapria himalayana HOM05D007020 ORTHO05D008935 1.2e-37 161.4 229 42.4
Sp5g31160 Schrenkiella parvula HOM05D007020 ORTHO05D008935 4.4e-37 159.5 192 49.5
MSTRG.25275 Avicennia marina HOM05D000001 ORTHO05D009837 4.9e-36 156.0 204 46.6
SalBow7G4579 Salvia bowleyana HOM05D000001 ORTHO05D009837 3.2e-35 153.3 212 42.9
Sopen04g035560 Solanum pennellii HOM05D007020 ORTHO05D008935 7.3e-32 142.1 99 68.7
Cre02.g078750 Chlamydomonas reinhardtii HOM05D007020 ORTHO05D008935 6.2e-31 139.0 284 35.2
Hma1.2p1_1598F.1_g292910 Hydrangea macrophylla HOM05D007020 ORTHO05D008935 1.1e-30 138.3 86 73.3
Nn3g20659 Nelumbo nucifera HOM05D007020 ORTHO05D008935 1.8e-30 137.5 86 74.4
Zm00001eb272250 Zea mays HOM05D007020 ORTHO05D008935 3.4e-29 133.3 203 42.4
PRCOL_00000246 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 3.8e-28 129.8 263 34.6
MCO01G778 Micromonas commoda HOM05D007020 ORTHO05D008935 4.2e-27 126.3 221 34.8
CBR_g29446 Chara braunii HOM05D007020 ORTHO05D008935 1.5e-24 117.9 323 29.4
CSS0023482 Camellia sinensis var. sinensis HOM05D007020 ORTHO05D008935 3.3e-24 116.7 90 64.4
Glyma.06G021100 Glycine max HOM05D007020 ORTHO05D008935 3.3e-24 116.7 97 60.8
SGA_v2.0_scaffold173G39193 Striga asiatica HOM05D003133 ORTHO05D003642 3.3e-24 116.7 206 38.8
SMO169G0259 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 2.0e-21 107.5 86 60.5
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 1.7e-20 104.4 209 33.0
Mapoly0092s0023 Marchantia polymorpha HOM05D007020 ORTHO05D008935 2.1e-18 97.4 100 48.0
TAR369G0870 Trochodendron aralioides HOM05D000901 ORTHO05D008935 9.6e-16 88.6 97 53.6
Actinidia15460 Actinidia chinensis HOM05D007020 ORTHO05D008935 3.9e-09 66.6 43 72.1
PRCOL_00005185 Prasinoderma coloniale HOM05D006623 ORTHO05D008102 1.3e-07 61.6 176 30.7
PRCOL_00002894 Prasinoderma coloniale HOM05D006623 ORTHO05D008102 4.0e-06 56.6 180 26.7
unitig_747.g21478 Utricularia gibba HOM05D006791 ORTHO05D008221 9.0e-06 55.5 194 26.3


User provided reference genes

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