Gene: Solyc04g081920.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g081920.3
  • Transcript Identifier Solyc04g081920.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 63749417-63752277 : positive

Gene Family Information

  • ID HOM05D007020
  • #Genes/#Species 114/88
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g081920.3.1
  • uniprot A0A3Q7GAT4
  • gene_id Solyc04g081920

Descriptions

  • Description Pseudouridine synthase (AHRD V3.3 *** A0A2G2V5B2_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0018105
IBA
GOA Databasepeptidyl-serine phosphorylation
GO:0046777
IBA
GOA Databaseprotein autophosphorylation
GO:0035556
IBA
GOA Databaseintracellular signal transduction
GO:0001522
IEA
GOA Databasepseudouridine synthesis
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0009451
IEA
GOA DatabaseRNA modification
GO:0009451
IEA
InterProRNA modification
GO:0006468
IEA
GOA Databaseprotein phosphorylation
GO:0016310
IEA
GOA Databasephosphorylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009982
IEA
GOA Databasepseudouridine synthase activity
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0005516
IBA
GOA Databasecalmodulin binding
GO:0004683
IBA
GOA Databasecalmodulin-dependent protein kinase activity
GO:0005509
IEA
GOA Databasecalcium ion binding
GO:0004672
IEA
GOA Databaseprotein kinase activity
GO:0016301
IEA
GOA Databasekinase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006145 Pseudouridine synthase, RsuA/RluA-like
IPR002942 RNA-binding S4 domain
IPR036986 RNA-binding S4 domain superfamily
IPR020103 Pseudouridine synthase, catalytic domain superfamily
Mapman id Description
16.5.3.4 RNA processing.RNA modification.pseudouridylation.dual-specificity tRNA/rRNA pseudouridine synthase (RluA)