Gene: SGA_v2.0_scaffold173G39193

General Information

Structural Information

  • Species Striga asiatica
  • Gene Identifier SGA_v2.0_scaffold173G39193
  • Transcript Identifier SGA_v2.0_scaffold173T39193
  • Gene Type Coding gene
  • Location scaffold173 : 716214-746725 : positive

Gene Family Information

  • ID HOM05D003133
  • #Genes/#Species 218/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

  • product Pentatricopeptide repeat-containing family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT4G23100
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT4G23100
GO:0019761
ISO
PLAZA Integrative Orthologyglucosinolate biosynthetic process AT4G23100
GO:0009908
ISO
PLAZA Integrative Orthologyflower development AT4G23100
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT4G23100
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress Zm00001eb264980
GO:0052544
ISO
PLAZA Integrative Orthologydefense response by callose deposition in cell wall AT4G23100
GO:0002213
ISO
PLAZA Integrative Orthologydefense response to insect AT4G23100
GO:0009700
ISO
PLAZA Integrative Orthologyindole phytoalexin biosynthetic process AT4G23100
GO:0009635
ISO
PLAZA Integrative Orthologyresponse to herbicide Zm00001eb264980
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT4G23100
GO:0009753
ISO
PLAZA Integrative Orthologyresponse to jasmonic acid AT4G23100
GO:0010193
ISO
PLAZA Integrative Orthologyresponse to ozone AT4G23100
GO:0042398
IEA
InterProcellular modified amino acid biosynthetic process
GO:0006750
IEA
InterProglutathione biosynthetic process
GO:0009451
IEA
InterProRNA modification
GO:0001522
IEA
InterPropseudouridine synthesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003824
IEA
InterProcatalytic activity
GO:0008270
IEA
InterProzinc ion binding
GO:0004357
IEA
InterProglutamate-cysteine ligase activity
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT4G23100
GO:0009536
ISO
PLAZA Integrative Orthologyplastid AT4G23100
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT4G23100

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR023214 HAD superfamily
IPR006145 Pseudouridine synthase, RsuA/RluA-like
IPR011556 Glutamate--cysteine ligase, plant-type
IPR035434 Glutamate--cysteine ligase, bacteria and plant
IPR002885 Pentatricopeptide repeat
IPR023198 Phosphoglycolate phosphatase-like, domain 2
IPR036412 HAD-like superfamily
IPR032867 DYW domain
IPR036986 RNA-binding S4 domain superfamily
IPR002942 RNA-binding S4 domain
IPR020103 Pseudouridine synthase, catalytic domain superfamily
IPR006336 Glutamate--cysteine ligase, GCS2
IPR041492 Haloacid dehalogenase-like hydrolase
IPR014746 Glutamine synthetase/guanido kinase, catalytic domain
Mapman id Description
10.3.1.1 Redox homeostasis.glutathione-based redox regulation.glutathione biosynthesis.gamma-glutamyl:cysteine ligase
16.5.3.4 RNA processing.RNA modification.pseudouridylation.dual-specificity tRNA/rRNA pseudouridine synthase (RluA)
7.10.6 Coenzyme metabolism.FMN/FAD biosynthesis.pyrimidine phosphatase (PyrP)