Gene: Sopen04g035560

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g035560
  • Transcript Identifier Sopen04g035560.2
  • Gene Type Coding gene
  • Location Spenn-ch04 : 76453446-76454961 : positive

Gene Family Information

  • ID HOM05D007020
  • #Genes/#Species 114/88
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g035560.2

Descriptions

  • Description Pseudouridine synthase family protein | FUNCTIONS IN: pseudouridine synthase activity | INVOLVED IN: pseudouridine synthesis, RNA modification | LOCATED IN: chloroplast | EXPRESSED IN: shoot, leaf lamina base, stem, embryo, leaf whorl | EXPRESSED DURING: D bilateral stage | CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, RluC/RluD , Pseudouridine synthase, catalytic domain , Pseudouridine synthase, RsuA and RluB/C/D/E/F , Pseudouridine synthase, RluC/RluD, conserved site , RNA-binding S4 | BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0009451
IEA
InterProRNA modification

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0009982
IEA
InterPropseudouridine synthase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002942 RNA-binding S4 domain
IPR020103 Pseudouridine synthase, catalytic domain superfamily
IPR006145 Pseudouridine synthase, RsuA/RluA-like
IPR036986 RNA-binding S4 domain superfamily
Mapman id Description
16.5.3.4 RNA processing.RNA modification.pseudouridylation.dual-specificity tRNA/rRNA pseudouridine synthase (RluA)