Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 1.9e-235 818.9 460 100.0
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 3.0e-180 635.6 460 77.8
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 2.9e-175 619.0 460 77.8
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.3e-162 577.0 454 76.4
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 8.3e-162 574.3 454 76.7
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 5.2e-156 555.1 454 74.2
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.1e-145 520.8 454 71.1
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 4.3e-134 482.3 482 61.8
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 6.2e-125 451.8 469 62.5
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.8e-124 450.3 473 61.7
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 3.4e-123 446.0 461 58.8
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 3.4e-123 446.0 461 58.8
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 4.4e-123 445.7 461 60.1
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.4e-121 439.9 510 57.6
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 9.2e-121 438.0 456 62.3
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 1.7e-119 433.7 474 59.5
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.3e-119 433.3 461 60.7
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 2.8e-117 426.4 504 55.2
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.2e-115 421.0 459 59.0
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.5e-115 420.6 477 57.7
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.7e-114 417.2 473 57.1
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.1e-113 414.5 461 57.0
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.9e-113 413.7 463 58.7
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 7.1e-113 411.8 508 55.3
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 9.3e-113 411.4 472 56.1
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 2.1e-112 410.2 470 56.6
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 2.7e-112 409.8 475 57.7
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.0e-111 407.9 545 51.7
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 2.3e-111 406.8 464 58.0
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 8.7e-111 404.8 470 58.5
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.1e-110 404.4 465 56.1
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.9e-110 403.7 466 56.0
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 2.8e-109 399.8 466 55.8
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 1.1e-108 397.9 470 55.1
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.1e-108 397.9 468 55.1
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.1e-108 397.9 461 55.5
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.1e-108 397.9 464 57.1
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.4e-108 397.5 470 56.0
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.1e-108 396.4 464 55.4
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 3.1e-108 396.4 473 54.1
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 6.9e-108 395.2 466 56.2
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 6.9e-108 395.2 466 55.6
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 9.0e-108 394.8 471 56.5
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.0e-108 394.8 482 54.1
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.7e-106 390.6 470 56.6
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 6.4e-106 388.7 463 54.4
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 8.4e-106 388.3 487 52.8
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 8.4e-106 388.3 463 55.7
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.4e-105 387.5 472 57.8
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 3.2e-105 386.3 466 53.9
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 4.2e-105 386.0 469 52.9
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 1.6e-104 384.0 515 54.6
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.6e-104 382.5 465 55.7
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 6.0e-104 382.1 468 56.0
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 7.9e-104 381.7 504 53.4
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 7.9e-104 381.7 504 54.2
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 2.3e-103 380.2 470 53.8
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.3e-103 380.2 471 55.4
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 6.7e-103 378.6 464 51.9
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.1e-102 377.9 484 52.9
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 4.3e-102 375.9 502 52.8
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 7.4e-102 375.2 468 52.4
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 2.1e-101 373.6 475 51.6
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 2.4e-100 370.2 458 52.2
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 3.1e-100 369.8 479 53.0
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 5.3e-100 369.0 480 52.3
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 6.9e-100 368.6 468 54.1
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.5e-99 367.5 461 53.8
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 3.4e-99 366.3 476 52.5
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 4.5e-99 365.9 465 54.0
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.7e-98 364.0 465 55.3
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.2e-98 363.6 459 52.9
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 2.9e-98 363.2 492 50.0
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 3.8e-98 362.8 466 52.6
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 3.8e-98 362.8 458 52.2
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 6.4e-98 362.1 463 55.1
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 6.4e-98 362.1 467 53.5
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.2e-96 357.8 467 55.2
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 1.6e-96 357.5 469 51.4
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 3.5e-96 356.3 473 53.3
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 6.7e-95 352.1 471 52.7
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.1e-94 351.3 464 51.5
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.1e-94 351.3 500 52.4
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 9.6e-94 348.2 472 51.9
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.4e-92 344.4 469 52.0
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 1.4e-92 344.4 468 52.1
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 3.1e-92 343.2 487 48.5
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 6.9e-92 342.0 475 50.7
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 2.0e-91 340.5 473 50.3
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.0e-91 340.5 464 54.3
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 2.6e-91 340.1 474 49.6
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 3.4e-91 339.7 479 49.1
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 3.4e-91 339.7 466 49.8
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.0e-90 338.2 471 49.7
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 4.9e-90 335.9 466 53.2
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 2.5e-89 333.6 466 53.0
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 4.2e-89 332.8 461 53.6
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 5.5e-89 332.4 466 50.9
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 7.1e-89 332.0 468 53.2
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.2e-88 331.3 481 48.9
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.7e-88 330.1 460 49.6
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 4.6e-88 329.3 473 49.5
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 6.0e-88 328.9 472 49.4
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 7.9e-88 328.6 429 52.0
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.0e-87 328.2 461 53.8
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 1.0e-87 328.2 471 47.3
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.9e-86 323.9 478 47.5
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 4.3e-86 322.8 471 49.7
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 5.7e-86 322.4 502 45.2
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 7.4e-86 322.0 471 47.3
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 2.8e-85 320.1 466 49.1
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 2.8e-85 320.1 466 49.1
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 2.8e-85 320.1 466 49.1
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.7e-85 319.7 482 47.7
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 4.8e-85 319.3 466 49.1
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 8.2e-85 318.5 465 49.0
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.8e-84 317.4 465 48.8
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 2.4e-84 317.0 466 47.6
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 3.1e-84 316.6 463 50.8
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 6.9e-84 315.5 465 48.0
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.2e-82 310.5 445 49.7
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 2.2e-82 310.5 473 48.8
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 6.5e-82 308.9 471 49.5
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 1.1e-81 308.1 489 47.9
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.1e-81 308.1 466 49.4
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.9e-81 307.4 462 48.5
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 9.3e-81 305.1 414 54.1
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.8e-79 300.8 395 48.9
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 5.1e-79 299.3 469 48.4
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 6.7e-79 298.9 470 48.5
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 2.5e-78 297.0 462 47.6
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 1.6e-77 294.3 494 45.7
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.2e-77 293.9 469 46.5
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 1.8e-76 290.8 470 47.2
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-75 288.1 469 46.3
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 4.5e-75 286.2 469 45.2
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 5.9e-75 285.8 455 45.1
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 2.9e-74 283.5 469 45.0
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 6.5e-74 282.3 431 46.6
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.5e-70 271.2 459 44.4
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.4e-65 254.6 496 40.9
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 1.9e-65 254.2 475 43.8
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 7.7e-59 232.3 487 39.6
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.3e-58 231.5 465 40.4
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.9e-57 227.6 461 39.9
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 5.5e-57 226.1 372 46.8
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 1.6e-56 224.6 465 40.4
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 1.6e-56 224.6 465 40.4
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 4.7e-56 223.0 465 40.2
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 1.2e-54 218.4 467 39.4
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 2.5e-49 200.7 153 69.9
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 4.0e-47 193.4 378 41.3
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 1.6e-43 181.4 366 42.1
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.1e-40 171.0 467 33.6
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.1e-40 169.5 168 57.1
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 2.6e-38 164.1 491 34.6
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 5.0e-34 149.8 479 31.7
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.0e-31 142.1 86 79.1
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 7.0e-28 129.4 130 58.5
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 7.8e-27 125.9 105 66.7
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 1.6e-24 118.2 124 58.1
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.6e-24 118.2 124 58.1
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 9.2e-20 102.4 91 63.7
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-17 95.5 89 58.4
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 1.6e-16 91.7 127 52.8
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 1.1e-15 89.0 84 63.1
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.4e-15 88.6 127 48.8
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 3.1e-15 87.4 502 28.1
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 2.0e-14 84.7 319 29.2
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 3.4e-14 84.0 227 30.0
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 4.9e-13 80.1 67 58.2
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 8.3e-13 79.3 125 44.8
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 2.3e-10 71.2 103 41.7
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 3.9e-10 70.5 133 39.8
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 1.5e-09 68.6 147 38.1
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 1.1e-07 62.4 126 31.7
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 1.4e-07 62.0 123 35.0
MCO15G526 Micromonas commoda HOM05D002258 ORTHO05D002539 8.9e-07 59.3 118 29.7
unitig_88.g27675 Utricularia gibba HOM05D002258 ORTHO05D002539 8.9e-07 59.3 123 34.1
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.2e-06 58.9 69 53.6
CBR_g34252 Chara braunii HOM05D002258 ORTHO05D002539 2.6e-06 57.8 122 32.8
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.4e-06 57.0 98 45.9
Nitab4.5_0002797g0030 Nicotiana tabacum HOM05D002258 ORTHO05D002539 9.9e-06 55.8 123 33.3
Oeu052506.1 Olea europaea HOM05D002258 ORTHO05D002539 9.9e-06 55.8 120 34.2


User provided reference genes

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