Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 2.3e-218 762.7 655 100.0
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 5.5e-159 565.5 652 86.8
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 6.7e-157 558.5 652 86.5
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 1.1e-156 557.8 646 87.5
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.1e-156 557.8 652 86.3
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 4.3e-148 529.3 623 86.4
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 2.7e-110 403.7 663 74.7
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 1.2e-108 398.3 669 74.9
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 1.4e-106 391.3 662 74.2
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 1.4e-106 391.3 658 73.7
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 1.6e-105 387.9 656 73.5
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 4.5e-105 386.3 645 75.5
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 4.5e-105 386.3 656 74.2
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 1.7e-104 384.4 645 76.0
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 4.3e-103 379.8 671 73.3
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 5.6e-103 379.4 658 72.5
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 9.5e-103 378.6 651 74.3
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 2.1e-102 377.5 681 72.0
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 1.8e-101 374.4 648 75.2
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 6.8e-101 372.5 642 74.1
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 6.8e-101 372.5 656 73.3
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 2.0e-100 370.9 650 73.7
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 1.7e-99 367.9 666 73.6
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 2.2e-99 367.5 653 72.6
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 3.7e-99 366.7 643 74.3
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 1.4e-98 364.8 681 69.9
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 2.4e-98 364.0 682 71.6
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 4.1e-98 363.2 557 81.5
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 9.2e-98 362.1 682 70.5
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 1.2e-97 361.7 681 71.1
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 1.2e-97 361.7 682 70.5
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 1.3e-96 358.2 618 76.9
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 5.0e-96 356.3 683 70.0
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 9.5e-95 352.1 587 68.5
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 1.2e-94 351.7 652 71.6
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 2.1e-94 350.9 678 69.9
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 1.0e-93 348.6 653 71.5
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 1.0e-93 348.6 652 71.0
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 1.0e-93 348.6 687 69.4
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 1.4e-93 348.2 650 72.3
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 6.8e-93 345.9 650 72.0
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 2.6e-92 344.0 635 72.3
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 7.5e-92 342.4 721 53.7
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 9.8e-92 342.0 630 73.5
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 9.8e-92 342.0 642 71.7
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 6.4e-91 339.3 662 70.2
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 4.1e-90 336.7 645 71.2
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 4.1e-90 336.7 573 75.2
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 1.2e-89 335.1 654 70.3
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 4.6e-89 333.2 683 68.2
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 1.3e-88 331.6 677 67.8
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 3.0e-88 330.5 663 70.4
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 1.1e-87 328.6 663 69.1
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 1.5e-87 328.2 662 68.6
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 2.5e-87 327.4 617 73.3
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 3.3e-87 327.0 721 44.2
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 5.6e-87 326.2 643 70.6
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 7.3e-87 325.9 682 67.0
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 1.2e-86 325.1 623 72.9
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 1.6e-86 324.7 655 69.9
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 4.7e-86 323.2 620 71.9
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 1.4e-85 321.6 539 79.6
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 1.4e-85 321.6 643 71.4
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 2.3e-85 320.9 655 71.1
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 6.8e-85 319.3 668 69.0
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 8.9e-85 318.9 663 69.2
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 1.2e-84 318.5 622 71.4
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 2.6e-84 317.4 665 68.6
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 3.4e-84 317.0 645 70.2
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 7.5e-84 315.8 648 70.4
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 3.7e-83 313.5 538 79.7
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 3.7e-83 313.5 670 67.8
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.9e-82 311.2 650 68.9
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 3.2e-82 310.5 661 68.5
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 4.1e-82 310.1 638 69.6
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 4.1e-82 310.1 638 69.4
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 4.1e-82 310.1 652 68.4
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 2.1e-81 307.8 579 74.3
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 2.1e-81 307.8 632 70.4
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 2.1e-81 307.8 638 69.4
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 2.1e-81 307.8 632 70.4
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 2.1e-81 307.8 533 78.6
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 3.5e-81 307.0 533 78.4
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 2.3e-80 304.3 552 75.9
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 4.3e-79 300.1 658 67.9
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 5.6e-79 299.7 571 74.6
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 1.3e-75 288.5 578 73.7
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 1.7e-75 288.1 563 39.8
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 1.3e-72 278.5 674 55.2
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 1.5e-71 275.0 549 75.6
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 1.1e-69 268.9 260 58.5
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 7.1e-66 256.1 226 60.6
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 3.0e-64 250.8 650 62.6
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 3.9e-64 250.4 739 56.6
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 6.6e-64 249.6 658 60.3
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 5.4e-58 229.9 278 53.2
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 3.0e-56 224.2 272 52.2
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 8.7e-56 222.6 198 63.6
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 1.8e-48 198.4 155 61.9
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 4.3e-47 193.7 524 71.4
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 4.5e-44 183.7 250 48.0
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 1.6e-41 175.3 198 64.6
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 8.7e-40 169.5 109 82.6
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 5.9e-36 156.8 113 63.7
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 3.2e-34 151.0 140 54.3
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 9.7e-31 139.4 207 40.6
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 2.4e-29 134.8 173 45.1
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 3.1e-29 134.4 110 59.1
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 6.5e-27 126.7 80 78.8
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 1.4e-26 125.6 187 50.8
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 7.2e-26 123.2 80 76.2
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 5.0e-19 100.5 248 35.5
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 8.5e-19 99.8 123 42.3
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 1.4e-16 92.4 129 47.3
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 3.0e-16 91.3 163 36.8
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 8.2e-14 83.2 72 94.4
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 1.7e-11 75.5 112 35.7


User provided reference genes

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