Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 1.2e-297 1025.8 525 100.0
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 4.7e-230 801.2 541 76.2
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 2.1e-225 785.8 527 78.6
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 1.7e-216 756.1 537 74.7
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 1.2e-209 733.4 553 72.0
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 1.4e-205 719.9 555 70.8
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 2.1e-161 573.2 537 55.9
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 5.9e-156 555.1 523 55.8
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 1.4e-152 543.9 537 55.3
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 5.2e-152 542.0 536 55.4
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 1.3e-150 537.3 538 54.6
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 2.2e-150 536.6 532 55.3
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 3.7e-150 535.8 536 54.9
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 8.3e-150 534.6 569 53.8
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 5.9e-148 528.5 609 51.1
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 6.6e-147 525.0 532 55.3
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 1.5e-146 523.9 542 53.3
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 9.5e-146 521.2 554 50.9
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 3.0e-144 516.2 551 50.6
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 4.0e-144 515.8 706 44.9
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 5.2e-144 515.4 537 53.3
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 8.9e-144 514.6 536 53.0
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 1.2e-143 514.2 551 50.6
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 4.4e-143 512.3 555 51.4
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 1.7e-142 510.4 554 50.0
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 3.7e-142 509.2 554 50.7
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 3.5e-140 502.7 559 51.0
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.0e-139 501.1 551 50.3
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 5.0e-139 498.8 570 48.4
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 4.3e-138 495.7 538 52.6
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 2.3e-136 490.0 575 48.9
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 4.0e-136 489.2 535 52.0
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 1.7e-134 483.8 555 49.0
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 2.9e-134 483.0 546 48.4
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 3.7e-134 482.6 563 48.8
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 4.6e-132 475.7 520 53.3
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 6.0e-132 475.3 574 48.4
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 2.3e-131 473.4 569 47.8
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 3.0e-131 473.0 577 47.3
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 1.9e-130 470.3 566 47.5
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 3.3e-130 469.5 562 47.7
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 1.6e-129 467.2 539 49.2
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 6.2e-129 465.3 550 47.6
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 3.1e-128 463.0 550 46.9
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 1.5e-127 460.7 582 47.6
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 1.5e-127 460.7 564 48.4
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 3.7e-126 456.1 535 47.9
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 4.9e-126 455.7 546 47.4
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 1.4e-125 454.1 554 47.5
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 6.6e-123 445.3 532 48.9
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 8.6e-123 444.9 573 47.8
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 3.3e-122 443.0 549 46.6
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 8.1e-121 438.3 464 52.8
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 8.1e-121 438.3 578 46.7
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 8.9e-120 434.9 532 48.1
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 1.5e-119 434.1 557 43.8
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 3.4e-119 433.0 556 45.1
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 5.8e-119 432.2 532 48.3
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 7.6e-119 431.8 534 46.1
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 6.0e-116 422.2 549 45.4
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 6.0e-116 422.2 525 47.6
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 1.1e-114 417.9 560 44.3
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 1.2e-113 414.5 549 43.5
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 4.7e-113 412.5 553 43.9
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 1.1e-112 411.4 519 46.2
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 5.2e-112 409.1 532 47.2
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 1.5e-111 407.5 518 45.8
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 2.6e-111 406.8 560 43.6
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 3.4e-111 406.4 546 43.6
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 4.4e-111 406.0 555 43.8
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 5.8e-111 405.6 584 43.5
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 7.6e-111 405.2 680 38.5
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 9.9e-111 404.8 531 44.3
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 3.8e-110 402.9 506 47.2
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 4.9e-110 402.5 550 45.3
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 1.1e-109 401.4 542 43.7
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 7.1e-109 398.7 542 43.4
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 2.1e-108 397.1 452 48.7
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 3.9e-107 392.9 536 45.7
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 2.5e-106 390.2 561 43.1
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 8.1e-105 385.2 492 46.7
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 1.9e-98 364.0 469 44.8
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 2.1e-97 360.5 454 44.5
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 9.9e-95 351.7 594 39.7
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 7.4e-90 335.5 546 39.4
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.5e-87 327.8 495 42.4
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 2.2e-86 323.9 551 36.5
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 2.1e-84 317.4 432 45.1
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 3.5e-84 316.6 331 49.2
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 2.8e-81 307.0 480 40.0
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 4.1e-80 303.1 399 48.1
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 5.0e-78 296.2 554 34.8
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 9.1e-72 275.4 442 40.3
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 2.6e-71 273.9 507 36.7
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.2e-69 266.9 210 62.4
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 5.1e-67 259.6 459 37.7
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.7e-65 253.4 424 39.2
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 5.3e-64 249.6 596 31.9
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 1.4e-59 235.0 383 38.1
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 1.1e-58 231.9 472 37.3
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 1.1e-56 225.3 535 33.1
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 1.2e-52 211.8 193 52.3
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.2e-46 191.0 149 63.8
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.5e-45 188.3 149 63.1
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 2.7e-44 184.1 363 38.3
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.6e-44 183.7 325 41.5
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 8.0e-44 182.6 212 47.6
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 5.7e-42 176.4 213 52.1
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 2.8e-41 174.1 136 63.2
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.0e-35 155.6 120 65.8
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 1.8e-35 154.8 569 27.4
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 4.3e-29 133.7 116 56.0
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 1.1e-24 119.0 458 27.5
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.5e-21 108.6 153 40.5
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 7.0e-16 89.7 209 30.1
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 7.0e-16 89.7 74 63.5
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 4.3e-13 80.5 73 56.2
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.8e-11 75.1 52 67.3
Ciclev10013286m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.5e-10 72.0 68 48.5


User provided reference genes

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