Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.8e-274 948.7 519 100.0
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 5.9e-249 864.0 442 92.1
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 7.2e-247 857.1 521 91.6
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.6e-246 855.9 442 91.4
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.4e-236 821.6 442 89.1
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 1.4e-234 816.2 499 90.4
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 2.8e-227 792.0 417 88.5
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 7.0e-226 787.3 427 86.7
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.3e-224 783.1 424 85.4
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 2.3e-224 782.3 444 84.9
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 6.6e-224 780.8 421 87.9
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 1.9e-223 779.2 416 87.3
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 1.2e-222 776.5 523 83.6
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 1.6e-222 776.2 417 85.6
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 6.1e-222 774.2 429 86.5
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.8e-221 772.7 442 83.3
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 2.3e-221 772.3 417 86.3
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 3.0e-221 771.9 524 83.0
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 6.8e-221 770.8 441 82.8
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.2e-220 770.0 424 86.1
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.5e-220 769.6 520 80.2
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 2.6e-220 768.8 524 83.2
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 3.4e-220 768.5 419 85.4
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.4e-220 768.5 421 85.7
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 9.8e-220 766.9 429 85.3
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 2.2e-219 765.8 421 85.7
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 2.9e-219 765.4 429 86.0
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.9e-219 765.4 437 85.1
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.7e-219 765.0 429 86.2
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 3.7e-219 765.0 424 85.6
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 4.9e-219 764.6 420 85.5
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 4.9e-219 764.6 416 85.8
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 6.4e-219 764.2 520 83.5
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 6.4e-219 764.2 416 85.6
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 6.4e-219 764.2 424 84.0
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 1.8e-218 762.7 442 82.6
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.8e-218 762.7 481 76.3
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 4.1e-218 761.5 542 80.3
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 5.4e-218 761.1 426 82.6
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 9.2e-218 760.4 426 86.6
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.6e-217 759.6 448 81.5
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.0e-217 759.2 422 86.0
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.7e-216 756.1 425 83.8
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 2.3e-216 755.7 439 82.7
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 3.9e-216 755.0 421 84.8
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 3.9e-216 755.0 424 84.0
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 6.6e-216 754.2 454 81.1
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.8e-213 746.1 450 79.6
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.8e-213 746.1 450 79.6
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 4.0e-213 745.0 443 81.5
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 5.2e-213 744.6 427 84.1
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 6.8e-213 744.2 446 80.3
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 1.5e-212 743.0 423 83.0
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 9.8e-212 740.3 460 78.3
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 3.0e-208 728.8 393 87.3
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 6.2e-206 721.1 441 80.7
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 1.4e-205 719.9 437 78.9
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.4e-205 719.9 421 81.9
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 1.8e-205 719.5 440 79.3
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 5.2e-205 718.0 438 78.8
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 9.8e-204 713.8 421 81.5
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 4.9e-203 711.4 460 74.6
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.9e-202 709.5 447 78.5
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.3e-200 703.4 417 80.8
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.3e-200 703.4 449 76.6
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 5.1e-200 701.4 437 76.7
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 8.6e-200 700.7 443 78.3
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.5e-199 699.9 424 79.5
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 1.5e-199 699.9 443 78.3
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 7.3e-199 697.6 433 77.6
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 3.6e-198 695.3 422 78.4
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 5.2e-197 691.4 449 73.9
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.0e-196 689.5 350 92.9
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 9.9e-196 687.2 426 79.3
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 1.1e-194 683.7 447 73.8
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 9.2e-194 680.6 451 72.9
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.9e-191 672.9 435 74.0
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 4.3e-191 671.8 434 74.2
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 5.6e-191 671.4 445 72.6
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 7.3e-191 671.0 443 73.6
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 6.2e-190 667.9 425 76.5
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 8.1e-190 667.5 451 72.9
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 8.9e-189 664.1 416 76.7
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 7.6e-188 661.0 446 72.6
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 4.9e-187 658.3 446 72.2
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.4e-186 656.0 391 82.4
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 3.2e-186 655.6 433 73.0
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 7.1e-186 654.4 443 72.9
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 2.1e-185 652.9 433 72.7
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.9e-184 648.7 439 71.8
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 3.3e-183 645.6 422 74.2
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 5.6e-183 644.8 454 70.5
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 7.3e-183 644.4 433 71.8
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 5.3e-181 638.3 376 79.3
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 5.8e-180 634.8 422 73.2
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 9.9e-180 634.0 397 78.1
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 5.4e-178 628.2 423 71.4
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 7.1e-178 627.9 418 71.5
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 1.5e-175 620.2 389 77.9
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 3.3e-175 619.0 390 75.6
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 9.6e-175 617.5 385 76.9
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 9.6e-175 617.5 422 72.5
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.5e-172 610.1 445 67.2
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 4.2e-170 602.1 465 66.5
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.6e-169 600.1 397 74.3
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 4.5e-164 582.0 315 86.0
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 6.7e-160 568.2 305 84.3
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 6.3e-158 561.6 343 79.0
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 7.9e-153 544.7 321 80.7
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 2.4e-141 506.5 356 70.5
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 2.2e-139 500.0 311 77.8
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 5.7e-135 485.3 293 79.2
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.4e-135 485.0 443 60.5
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.5e-127 460.7 379 58.0
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 4.1e-125 452.6 324 68.8
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 1.1e-122 444.5 486 49.0
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 4.0e-120 436.0 363 58.4
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.1e-117 427.9 324 65.4
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 1.1e-109 401.4 218 82.1
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 6.6e-107 392.1 325 53.8
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 8.6e-107 391.7 191 93.7
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 1.2e-95 354.8 430 47.4
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 1.5e-90 337.8 259 66.0
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 1.5e-90 337.8 230 72.6
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 9.3e-69 265.4 258 57.4
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 1.5e-63 248.1 254 69.7
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 1.8e-56 224.6 166 72.3
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 1.3e-51 208.4 114 85.1
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 5.6e-50 203.0 136 75.0
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 3.6e-36 157.1 108 77.8
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 1.3e-35 155.2 318 34.0
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 8.5e-30 136.0 77 79.2
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.4e-27 128.6 79 78.5
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 3.9e-27 127.1 270 33.0
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 3.2e-21 107.5 210 33.3
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.6e-20 104.0 80 63.8
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 9.1e-16 89.4 52 75.0
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.8e-11 75.1 86 54.7
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 3.3e-10 70.9 62 59.7
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.8e-09 67.8 29 93.1
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 2.7e-07 61.2 28 92.9
QL12p008547 Quercus lobata HOM05D005140 ORTHO05D006288 3.8e-06 57.4 128 60.2


User provided reference genes

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