Gene: Solyc08g077750.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g077750.4
  • Transcript Identifier Solyc08g077750.4.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 59751638-59758984 : negative

Gene Family Information

  • ID HOM05D005140
  • #Genes/#Species 146/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g077750.4.1
  • uniprot A0A3Q7HUD2
  • gene_id Solyc08g077750

Descriptions

  • Description Decapping nuclease DXO-like protein, chloroplastic (AHRD V3.3 *** A0A1U8GHM1_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IBA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0110155
IBA
GOA DatabaseNAD-cap decapping
GO:0000956
IBA
GOA Databasenuclear-transcribed mRNA catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0034353
IBA
GOA DatabaseRNA pyrophosphohydrolase activity
GO:0004534
ISO
PLAZA Integrative Orthology5'-3' exoribonuclease activity AT4G17620
GO:0000175
ISO
PLAZA Integrative Orthology3'-5'-exoribonuclease activity AT4G17620

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005829
IBA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039039 RAI1-like family
IPR013961 RAI1-like
Mapman id Description
16.4.3.1 RNA processing.RNA surveillance.non-canonical RNA decapping and decay.decapping nuclease (DXO1)