Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 8.9e-162 573.5 291 100.0
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 6.2e-139 497.7 289 84.1
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.9e-129 463.8 290 79.0
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.3e-128 463.4 290 79.0
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.8e-128 461.8 290 78.3
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.6e-126 454.9 289 77.9
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.0e-125 452.2 290 77.6
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 5.5e-119 431.4 259 82.2
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 3.0e-117 425.6 291 72.2
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 2.2e-115 419.5 289 71.3
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 1.4e-114 416.8 289 70.6
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 2.0e-113 412.9 289 69.9
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 5.9e-113 411.4 290 70.3
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 2.2e-112 409.5 293 70.3
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 3.6e-110 402.1 289 70.6
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 7.9e-110 401.0 293 70.0
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 9.7e-108 394.0 289 67.8
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 2.8e-107 392.5 276 70.3
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 3.7e-107 392.1 278 70.9
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 3.7e-107 392.1 285 68.4
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 8.2e-107 391.0 289 69.9
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.1e-106 390.6 288 67.4
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.4e-106 389.4 291 67.4
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 3.1e-106 389.0 289 67.5
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.1e-106 388.7 261 75.5
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.1e-106 388.7 293 67.6
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.1e-106 388.7 293 67.6
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 9.1e-106 387.5 289 67.8
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 1.2e-105 387.1 290 70.0
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 2.6e-105 386.0 295 67.5
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 7.7e-105 384.4 264 71.2
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 7.7e-105 384.4 289 67.5
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 7.7e-105 384.4 303 64.4
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 1.3e-104 383.6 292 65.4
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 2.2e-104 382.9 289 66.1
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 5.0e-104 381.7 318 62.6
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.1e-103 380.6 234 76.1
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 5.5e-103 378.3 301 63.1
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 9.4e-103 377.5 290 63.4
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.2e-102 377.1 293 64.8
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.6e-102 376.7 295 65.8
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.6e-102 376.7 295 65.8
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.6e-102 376.7 291 66.3
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 2.1e-102 376.3 285 65.6
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 2.7e-102 375.9 289 66.1
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 7.9e-102 374.4 291 64.6
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.8e-101 373.2 288 65.6
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 1.8e-101 373.2 291 64.3
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.8e-101 373.2 290 63.1
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 5.1e-101 371.7 287 65.2
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 5.1e-101 371.7 276 67.8
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 6.7e-101 371.3 291 63.9
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 8.8e-101 370.9 294 66.0
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 1.1e-100 370.5 287 65.2
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.5e-100 370.2 291 63.6
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.5e-100 370.2 291 63.6
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.5e-100 370.2 263 68.8
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 2.6e-100 369.4 289 64.0
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 7.4e-100 367.9 289 64.0
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.4e-100 367.9 263 68.8
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.3e-99 367.1 287 66.6
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 1.7e-99 366.7 295 65.4
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 1.7e-99 366.7 295 65.4
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.7e-99 366.7 297 65.0
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 2.2e-99 366.3 295 64.4
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 4.8e-99 365.2 346 56.4
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 4.8e-99 365.2 294 64.6
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 6.3e-99 364.8 287 65.2
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 3.1e-98 362.5 295 62.4
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 4.1e-98 362.1 295 64.4
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 5.3e-98 361.7 331 58.6
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 7.0e-98 361.3 278 66.5
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 5.9e-97 358.2 288 63.9
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 5.5e-95 351.7 257 68.9
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 7.2e-95 351.3 290 61.7
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 7.2e-95 351.3 291 61.5
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 1.6e-94 350.1 289 60.9
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 3.6e-94 349.0 265 64.9
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 1.0e-93 347.4 291 63.2
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 2.3e-93 346.3 291 62.9
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 3.0e-93 345.9 290 63.8
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 3.0e-93 345.9 291 61.5
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 5.2e-93 345.1 255 67.5
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 6.7e-93 344.7 289 62.3
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 1.1e-92 344.0 236 68.6
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 1.5e-92 343.6 245 66.1
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 4.4e-92 342.0 290 62.1
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.7e-91 340.1 278 64.7
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 2.2e-91 339.7 318 55.3
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 4.8e-91 338.6 290 61.4
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.8e-90 336.7 282 61.0
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 5.0e-88 328.6 289 58.8
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 8.5e-88 327.8 290 60.3
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.5e-87 327.0 224 70.5
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 2.5e-87 326.2 232 65.1
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 6.1e-86 321.6 205 72.7
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.4e-85 320.5 285 56.5
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 6.7e-85 318.2 277 58.8
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.2e-83 313.2 224 68.3
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 8.3e-83 311.2 288 55.6
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.3e-80 303.9 206 68.0
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 8.5e-80 301.2 211 66.4
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 8.5e-80 301.2 225 65.8
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 1.1e-79 300.8 283 56.2
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.7e-78 295.4 296 55.4
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 5.7e-76 288.5 266 57.9
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 2.9e-72 276.2 255 58.8
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.0e-68 263.5 225 64.4
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 7.0e-66 255.0 215 60.9
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 2.5e-63 246.5 203 61.1
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.3e-63 246.1 203 65.0
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.2e-62 244.2 280 48.6
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 3.6e-62 242.7 188 61.7
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 6.1e-62 241.9 202 62.9
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 1.5e-60 237.3 239 58.2
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.7e-59 233.8 277 48.7
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 6.0e-57 225.3 271 49.4
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 2.3e-56 223.4 149 72.5
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 8.6e-56 221.5 299 39.8
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 4.7e-54 215.7 238 50.0
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.8e-53 213.8 179 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 1.1e-50 204.5 249 44.2
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.9e-47 193.7 109 84.4
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.6e-46 190.7 137 69.3
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 2.8e-46 189.9 130 70.8
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 5.8e-44 182.2 246 43.9
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 4.1e-42 176.0 290 39.7
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.6e-41 174.1 170 54.7
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 2.1e-41 173.7 121 66.9
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 4.3e-39 166.0 203 47.3
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 3.1e-37 159.8 118 65.3
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 1.2e-33 147.9 218 41.7
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 3.0e-32 143.3 304 33.6
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 5.1e-32 142.5 200 44.5
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.9e-27 126.7 85 69.4
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 5.6e-23 112.5 171 39.8
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 3.4e-20 103.2 249 29.7
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 3.3e-15 86.7 226 27.4
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 4.9e-11 72.8 86 61.6


User provided reference genes

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