Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 0.0e+00 2280.4 1135 100.0
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 0.0e+00 1882.8 1131 82.8
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 0.0e+00 1827.8 1135 81.1
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 0.0e+00 1801.6 1134 80.2
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 0.0e+00 1796.2 1135 79.8
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 0.0e+00 1298.9 1153 59.8
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 0.0e+00 1251.9 1161 58.6
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 0.0e+00 1234.9 1168 57.4
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 0.0e+00 1187.6 1140 55.6
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 0.0e+00 1183.3 1145 55.3
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 0.0e+00 1146.0 1140 55.0
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 0.0e+00 1133.2 1158 54.5
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 0.0e+00 1122.1 1170 53.4
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 0.0e+00 1121.7 1016 58.3
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 0.0e+00 1117.8 1157 53.5
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 0.0e+00 1112.1 1119 53.8
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 0.0e+00 1107.0 1169 53.3
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 0.0e+00 1103.2 1151 53.4
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 0.0e+00 1094.7 1110 53.6
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 0.0e+00 1090.5 1137 53.3
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1075.1 1123 52.4
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 0.0e+00 1075.1 1145 52.8
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 1.6e-311 1072.8 1111 52.4
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 3.9e-311 1071.6 1131 52.8
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 2.0e-310 1069.3 1131 52.7
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 2.6e-310 1068.9 1085 53.4
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 3.4e-310 1068.5 1124 52.8
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 1.7e-309 1066.2 1127 52.4
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 3.8e-309 1065.1 1116 52.7
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 1.4e-308 1063.1 1128 51.2
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 2.5e-308 1062.4 1132 51.6
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 1.0e-306 1057.0 1148 51.6
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 3.0e-306 1055.4 1112 52.4
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 3.9e-306 1055.0 1117 52.7
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 2.6e-305 1052.4 1177 50.3
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 5.7e-305 1051.2 1122 52.0
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 1.1e-303 1047.0 1068 53.3
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 1.4e-303 1046.6 1116 52.0
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 3.1e-303 1045.4 1112 52.2
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 3.2e-300 1035.4 1145 50.6
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 8.0e-299 1030.8 1125 52.4
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 6.7e-298 1027.7 1146 50.3
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 1.7e-296 1023.1 1194 49.1
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 1.4e-295 1020.0 1126 51.2
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 3.1e-295 1018.8 1146 51.6
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 3.6e-291 1005.4 1152 49.0
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 1.0e-290 1003.8 1159 48.8
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.5e-289 1000.0 1126 49.8
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 2.8e-288 995.7 737 71.6
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 6.3e-288 994.6 1112 50.9
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 9.1e-287 990.7 1181 48.8
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 1.2e-286 990.3 1115 50.3
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 1.8e-282 976.5 1135 48.6
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 6.8e-282 974.5 1172 47.3
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 3.7e-280 968.8 1130 48.5
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 4.1e-279 965.3 1131 49.5
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 5.4e-279 964.9 1128 49.1
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 4.5e-278 961.8 995 53.2
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 3.6e-275 952.2 1125 48.0
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 1.8e-274 949.9 1125 47.7
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 4.0e-274 948.7 772 62.2
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 3.4e-273 945.7 1160 47.1
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 7.0e-271 937.9 1132 47.9
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 2.9e-269 932.6 723 66.5
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 2.5e-268 929.5 939 55.4
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 6.8e-266 921.4 1134 46.6
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.3e-264 917.1 764 60.5
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 4.9e-264 915.2 1113 46.5
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 1.9e-263 913.3 1171 46.7
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 2.7e-262 909.4 1153 46.1
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 2.2e-256 889.8 947 51.7
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 7.1e-255 884.8 758 60.3
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 2.3e-253 879.8 908 53.4
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 6.4e-248 861.7 1312 40.6
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 4.7e-243 845.5 689 62.7
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 6.0e-238 828.6 1124 43.2
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 3.9e-237 825.9 803 56.2
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 9.0e-234 814.7 863 52.0
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 6.4e-232 808.5 985 46.3
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 4.0e-226 789.3 1048 46.6
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 4.0e-226 789.3 970 47.5
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 9.9e-225 784.6 943 45.8
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 1.1e-223 781.2 900 47.7
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 6.9e-210 735.3 781 52.2
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 2.2e-200 703.7 609 58.5
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 6.8e-165 585.9 524 58.8
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 3.7e-155 553.5 698 43.8
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 2.0e-153 547.7 757 42.3
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 6.4e-139 499.6 534 52.8
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 3.2e-130 470.7 804 35.6
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 7.3e-127 459.5 364 63.7
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 2.9e-115 421.0 738 39.4
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 9.9e-108 396.0 814 37.3
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.8e-77 295.4 559 36.0
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.0e-75 289.7 184 82.1
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 8.5e-51 206.8 165 64.2
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.4e-48 199.5 182 61.5
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 3.1e-45 188.3 181 59.1
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.3e-43 182.2 193 53.9
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 7.3e-42 177.2 549 29.1
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 9.5e-42 176.8 135 68.9
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 2.9e-38 165.2 129 58.1
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 1.4e-37 162.9 93 78.5
TAR622G0913 Trochodendron aralioides HOM05D007034 ORTHO05D008665 4.6e-36 157.9 407 31.9
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 1.2e-25 123.2 75 65.3
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 1.6e-25 122.9 72 72.2
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 1.4e-24 119.8 403 28.3
Atru.chr6.1955 Acer truncatum HOM05D007034 ORTHO05D008665 5.8e-23 114.4 180 38.9
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 2.4e-21 109.0 96 58.3
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.1e-17 95.9 74 66.2
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 6.2e-17 94.4 74 64.9
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 1.2e-15 90.1 70 55.7
MBI11_g13135_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 6.4e-14 84.3 195 33.3
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 5.1e-11 74.7 53 62.3
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 2.5e-10 72.4 196 30.1
CSS0041671 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.4e-08 66.6 74 52.7
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 3.1e-08 65.5 197 24.9
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 4.0e-08 65.1 197 26.4
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 6.9e-08 64.3 202 23.8
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 1.2e-07 63.5 198 24.7
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.2e-07 63.5 198 24.2
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 1.2e-07 63.5 198 24.2
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 1.2e-07 63.5 202 24.3
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 1.2e-07 63.5 202 24.8
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.5e-07 63.2 198 24.7
Sabra04G0012300 Salix brachista HOM05D006350 ORTHO05D007850 1.5e-07 63.2 293 22.9
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 2.0e-07 62.8 197 23.9
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 2.0e-07 62.8 202 25.2
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 2.0e-07 62.8 202 25.2
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 2.0e-07 62.8 202 24.8
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 2.0e-07 62.8 202 23.3
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 2.6e-07 62.4 197 23.9
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 2.6e-07 62.4 202 24.3
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 2.6e-07 62.4 198 23.7
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 3.4e-07 62.0 197 24.9
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 3.4e-07 62.0 203 24.6
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 4.4e-07 61.6 198 25.3
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 4.4e-07 61.6 202 24.3
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 4.4e-07 61.6 203 23.6
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 5.8e-07 61.2 199 23.1
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 5.8e-07 61.2 197 23.9
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 5.8e-07 61.2 195 25.6
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 7.6e-07 60.8 202 24.3
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 7.6e-07 60.8 141 30.5
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 7.6e-07 60.8 257 23.3
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 7.6e-07 60.8 202 23.3
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 9.9e-07 60.5 147 28.6
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 9.9e-07 60.5 202 23.3
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 9.9e-07 60.5 202 23.3
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 9.9e-07 60.5 203 23.6
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 9.9e-07 60.5 203 26.1
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 9.9e-07 60.5 202 23.3
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 9.9e-07 60.5 202 23.3
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 9.9e-07 60.5 194 25.3
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 9.9e-07 60.5 197 25.9
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 9.9e-07 60.5 203 24.6
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 1.3e-06 60.1 45 55.6
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 1.3e-06 60.1 199 25.6
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 1.3e-06 60.1 203 23.6
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 1.3e-06 60.1 197 23.9
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 1.3e-06 60.1 202 24.3
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 1.7e-06 59.7 193 26.9
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 1.7e-06 59.7 202 23.3
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 1.7e-06 59.7 202 22.8
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 1.7e-06 59.7 202 23.3
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 1.7e-06 59.7 294 22.8
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 2.2e-06 59.3 204 23.0
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 2.2e-06 59.3 192 22.9
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 2.9e-06 58.9 202 23.8
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 2.9e-06 58.9 252 23.0
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 2.9e-06 58.9 202 22.8
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 2.9e-06 58.9 202 23.3
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 3.8e-06 58.5 262 25.6
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 3.8e-06 58.5 197 23.9
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 3.8e-06 58.5 202 22.3
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 3.8e-06 58.5 196 25.5
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 4.9e-06 58.2 207 24.2
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 4.9e-06 58.2 198 25.8
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 4.9e-06 58.2 197 23.9
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 6.4e-06 57.8 197 23.9
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 6.4e-06 57.8 197 25.9
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 8.4e-06 57.4 217 24.4
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 8.4e-06 57.4 197 23.9


User provided reference genes

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