Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 5.7e-110 401.0 210 100.0
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 1.3e-32 144.1 107 70.1
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 3.7e-32 142.5 107 73.8
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 6.2e-32 141.7 107 69.2
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 6.2e-32 141.7 107 69.2
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 6.2e-32 141.7 107 69.2
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 1.4e-31 140.6 106 68.9
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 1.8e-31 140.2 98 72.4
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 1.8e-31 140.2 98 76.5
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.8e-31 140.2 106 68.9
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 2.4e-31 139.8 107 72.0
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 2.4e-31 139.8 107 72.0
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 2.4e-31 139.8 107 68.2
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 3.1e-31 139.4 107 66.4
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.1e-31 139.4 107 67.3
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 3.1e-31 139.4 107 67.3
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 3.1e-31 139.4 106 67.0
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 4.1e-31 139.0 107 67.3
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 4.1e-31 139.0 107 67.3
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 4.1e-31 139.0 107 68.2
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 5.3e-31 138.7 107 67.3
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 5.3e-31 138.7 107 69.2
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 5.3e-31 138.7 107 69.2
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 6.9e-31 138.3 107 65.4
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 6.9e-31 138.3 114 69.3
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 6.9e-31 138.3 107 68.2
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 9.0e-31 137.9 107 66.4
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 9.0e-31 137.9 98 71.4
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 9.0e-31 137.9 107 69.2
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.2e-30 137.5 98 70.4
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 1.2e-30 137.5 107 66.4
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.5e-30 137.1 107 67.3
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 1.5e-30 137.1 107 65.4
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 1.5e-30 137.1 107 66.4
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 2.0e-30 136.7 97 71.1
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 2.6e-30 136.3 106 66.0
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 2.6e-30 136.3 106 66.0
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 2.6e-30 136.3 129 60.5
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 2.6e-30 136.3 105 65.7
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 2.6e-30 136.3 98 70.4
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 3.4e-30 136.0 107 66.4
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 3.4e-30 136.0 98 70.4
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.5e-30 135.6 107 66.4
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 4.5e-30 135.6 107 66.4
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 5.8e-30 135.2 107 66.4
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 7.6e-30 134.8 98 69.4
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 7.6e-30 134.8 98 69.4
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.0e-29 134.4 96 71.9
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 1.0e-29 134.4 107 65.4
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 1.0e-29 134.4 106 66.0
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 1.3e-29 134.0 106 65.1
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 1.7e-29 133.7 98 69.4
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 1.7e-29 133.7 107 65.4
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 1.7e-29 133.7 107 65.4
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 1.7e-29 133.7 107 62.6
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 1.7e-29 133.7 98 68.4
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 1.7e-29 133.7 107 64.5
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 2.2e-29 133.3 107 63.6
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 2.9e-29 132.9 107 64.5
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 3.8e-29 132.5 98 67.3
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 5.0e-29 132.1 106 63.2
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 8.4e-29 131.3 107 66.4
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 8.4e-29 131.3 98 66.3
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 8.4e-29 131.3 107 63.6
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 8.4e-29 131.3 107 63.6
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 1.4e-28 130.6 97 69.1
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.5e-28 129.8 98 66.3
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 4.2e-28 129.0 98 68.4
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 4.2e-28 129.0 105 66.7
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 4.2e-28 129.0 105 66.7
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 5.5e-28 128.6 101 65.3
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 5.5e-28 128.6 98 66.3
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 9.3e-28 127.9 107 61.7
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 9.3e-28 127.9 98 65.3
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 1.2e-27 127.5 98 66.3
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.7e-27 126.3 98 63.3
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.8e-26 123.6 97 62.9
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 3.0e-26 122.9 98 62.2
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 3.0e-26 122.9 98 64.3
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 3.0e-26 122.9 98 63.3
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 3.9e-26 122.5 98 62.2
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 3.9e-26 122.5 98 62.2
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 3.9e-26 122.5 98 61.2
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 3.9e-26 122.5 98 61.2
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 3.9e-26 122.5 98 61.2
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 3.9e-26 122.5 98 61.2
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 3.9e-26 122.5 98 62.2
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 3.9e-26 122.5 98 61.2
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 5.1e-26 122.1 98 61.2
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 5.1e-26 122.1 96 65.6
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 5.1e-26 122.1 128 56.2
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 1.1e-25 120.9 98 61.2
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.5e-25 119.8 124 54.0
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 7.4e-25 118.2 98 61.2
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 2.2e-24 116.7 130 52.3
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 6.3e-24 115.2 114 55.3
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 8.2e-24 114.8 98 61.2
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 8.2e-24 114.8 84 69.0
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 3.1e-23 112.8 86 67.4
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.5e-22 110.5 114 54.4
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 2.6e-22 109.8 107 60.7
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.3e-21 107.5 98 55.1
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 6.5e-21 105.1 96 56.2
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 2.5e-20 103.2 98 54.1
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 3.6e-19 99.4 97 52.6
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-16 90.9 100 52.0
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.2e-16 88.2 103 51.5
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-15 87.8 103 50.5
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.5e-14 84.0 133 42.1
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.6e-11 73.9 96 42.7
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 2.1e-11 73.6 79 54.4
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 6.7e-10 68.6 102 39.2
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 9.7e-09 64.7 97 40.2
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 4.1e-07 59.3 56 53.6


User provided reference genes

Program Settings