Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 0.0e+00 1495.3 735 100.0
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 0.0e+00 1190.6 736 80.2
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 0.0e+00 1106.3 736 75.8
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 0.0e+00 1104.4 736 75.7
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.6e-306 1055.0 737 73.4
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 3.2e-216 755.7 738 55.6
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 6.0e-207 724.9 738 54.1
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.3e-206 723.8 739 54.1
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.3e-204 717.2 752 53.3
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.4e-203 713.0 737 52.8
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.0e-201 707.6 741 52.1
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.2e-200 702.6 737 53.9
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 2.1e-199 699.9 872 47.5
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.5e-197 693.7 738 52.4
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 5.7e-197 691.8 746 50.7
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 5.7e-197 691.8 766 52.0
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.9e-193 679.5 752 51.2
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 5.0e-193 678.7 716 52.5
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.0e-190 671.0 748 50.4
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.5e-189 667.2 740 52.0
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.3e-188 664.1 729 49.9
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.5e-186 657.1 755 49.5
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.0e-186 656.8 746 50.9
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.5e-186 655.6 745 50.2
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 8.5e-185 651.4 740 50.5
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 2.1e-183 646.7 748 48.7
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.6e-181 639.8 747 49.3
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 5.7e-181 638.6 766 47.8
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.8e-180 636.3 768 47.8
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.8e-179 633.6 768 47.7
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.8e-179 633.6 752 49.7
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 4.1e-179 632.5 751 47.4
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 7.0e-179 631.7 610 56.9
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.8e-177 625.9 766 47.7
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 5.0e-177 625.5 742 48.2
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 4.2e-176 622.5 756 46.0
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.6e-175 620.5 723 49.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 2.3e-174 616.7 753 46.2
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 7.5e-173 611.7 744 48.3
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 6.5e-169 598.6 756 46.2
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.1e-168 597.8 713 48.5
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.6e-167 594.0 714 48.6
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 4.7e-167 592.4 719 49.0
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.4e-166 590.9 761 46.6
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 5.2e-166 589.0 761 46.8
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 8.8e-166 588.2 726 48.6
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 7.5e-165 585.1 761 46.3
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 2.8e-164 583.2 737 46.0
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.2e-162 577.8 735 47.1
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 7.7e-162 575.1 732 45.4
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.0e-161 574.7 724 46.7
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.3e-161 573.5 724 46.8
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.9e-160 570.5 728 44.5
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 5.5e-160 568.9 736 45.8
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 3.6e-159 566.2 723 46.6
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.6e-159 566.2 743 45.9
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.0e-158 564.7 729 45.5
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.0e-157 560.5 709 47.7
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.6e-157 560.1 715 47.4
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.7e-156 557.4 734 45.8
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.7e-156 557.4 720 44.7
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.8e-156 556.6 715 45.2
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.7e-156 556.2 729 44.2
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 6.3e-156 555.4 713 46.1
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 8.3e-156 555.1 709 47.5
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 7.0e-155 552.0 733 44.7
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.2e-154 551.2 752 44.3
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 2.0e-154 550.4 713 45.6
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 6.6e-153 545.4 723 44.7
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 7.3e-152 542.0 710 47.2
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.0e-150 538.1 640 46.6
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.5e-149 534.3 790 41.8
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.9e-148 530.0 757 43.7
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.1e-147 528.1 692 44.7
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.3e-145 521.2 730 45.3
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.9e-144 517.3 714 44.7
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.6e-143 514.2 759 42.8
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 4.0e-142 509.6 761 41.1
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.0e-142 509.6 718 43.9
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 2.0e-141 507.3 736 43.2
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.6e-141 506.9 721 42.3
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 4.9e-140 502.7 708 43.1
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 6.4e-140 502.3 419 62.3
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.2e-139 500.0 714 43.7
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 2.7e-138 496.9 725 41.7
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 4.6e-138 496.1 713 42.5
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.3e-137 494.6 693 43.7
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 3.0e-137 493.4 555 51.0
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 8.6e-137 491.9 709 42.9
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 3.3e-136 490.0 533 52.7
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.2e-135 488.0 553 50.5
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.1e-131 474.9 749 39.7
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.6e-130 471.1 722 41.7
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 2.7e-130 470.3 728 42.2
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 1.0e-129 468.4 727 41.8
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 2.3e-129 467.2 726 42.0
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 5.6e-128 462.6 736 41.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 5.6e-128 462.6 743 41.6
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 8.1e-127 458.8 417 55.9
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.1e-126 458.4 728 41.5
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 6.4e-124 449.1 714 40.2
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.7e-121 441.0 727 37.3
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 5.6e-120 436.0 694 39.0
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 8.1e-119 432.2 589 42.1
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.0e-113 415.2 704 38.6
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 2.1e-111 407.5 700 37.9
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.2e-109 401.7 519 46.1
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 2.0e-109 401.0 719 36.6
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.6e-109 400.6 705 37.6
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.1e-105 386.3 480 47.9
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.3e-103 381.7 730 34.4
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 4.8e-103 379.8 732 35.2
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 6.2e-103 379.4 442 48.9
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 1.4e-99 368.2 527 41.7
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.1e-99 365.9 441 49.0
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 6.0e-98 362.8 723 34.4
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.7e-95 353.6 584 36.1
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.6e-90 338.2 507 41.2
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.1e-86 325.5 379 50.9
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.0e-76 290.0 670 33.7
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.9e-75 288.1 742 30.9
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.7e-74 284.3 385 42.6
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.4e-70 271.9 306 49.7
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 8.0e-66 256.1 829 27.9
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 7.4e-64 249.6 404 39.4
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.0e-57 227.3 629 28.1
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.2e-55 221.5 399 39.1
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 7.0e-54 216.5 171 63.2
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.8e-49 201.8 139 66.9
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.2e-43 180.6 264 39.4
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.2e-42 179.1 242 43.4
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 2.3e-41 174.9 204 47.1
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-39 169.1 586 26.6
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.1e-38 166.0 123 65.0
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.2e-38 164.5 241 45.2
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.7e-36 158.7 253 37.9
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 2.3e-36 158.3 123 64.2
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.1e-34 151.8 547 26.9
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.1e-30 137.5 194 42.8
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 5.4e-30 137.1 148 47.3
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.6e-29 135.6 538 25.3
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 9.5e-27 126.3 127 50.4
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.4e-22 111.7 341 31.1
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 8.6e-20 103.2 201 32.8
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.1e-18 98.6 145 42.1
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 2.3e-17 95.1 62 69.4
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.2e-16 92.8 288 26.7
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 4.4e-16 90.9 171 40.4
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.4e-14 84.0 203 29.6
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 5.4e-14 84.0 120 41.7
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 1.5e-11 75.9 73 46.6
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 1.1e-09 69.7 76 48.7
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.1e-09 69.7 183 32.2
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 3.1e-09 68.2 189 28.6
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 6.8e-09 67.0 69 49.3
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.4e-08 64.3 53 62.3
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 4.4e-08 64.3 57 56.1
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 4.4e-08 64.3 57 59.6
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 7.6e-08 63.5 145 34.5
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 9.9e-08 63.2 65 55.4
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 1.7e-07 62.4 480 20.2
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.8e-07 61.2 70 44.3
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 3.2e-06 58.2 58 39.7


User provided reference genes

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