Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G302300 Theobroma cacao HOM05D000706 ORTHO05D001633 2.8e-205 718.4 363 100.0
Thecc.01G023200 Theobroma cacao HOM05D000706 ORTHO05D001633 6.0e-83 312.0 331 57.4
Duzib187G0171 Durio zibethinus HOM05D000706 ORTHO05D001633 5.1e-74 282.3 331 53.5
COL.COLO4_21963 Corchorus olitorius HOM05D000706 ORTHO05D001633 6.7e-74 282.0 420 48.1
Duzib264G0704 Durio zibethinus HOM05D000706 ORTHO05D001633 2.2e-69 266.9 332 51.8
Duzib147G0672 Durio zibethinus HOM05D000706 ORTHO05D001633 2.1e-67 260.4 326 50.0
Gohir.D03G011000 Gossypium hirsutum HOM05D000706 ORTHO05D001633 1.4e-66 257.7 326 50.0
Gorai.003G011400 Gossypium raimondii HOM05D000706 ORTHO05D001633 1.4e-66 257.7 326 50.0
Gohir.A02G169000 Gossypium hirsutum HOM05D000706 ORTHO05D001633 3.9e-66 256.1 326 50.0
Gohir.A10G097500 Gossypium hirsutum HOM05D000706 ORTHO05D001633 2.9e-61 240.0 331 46.8
Gohir.D11G185700 Gossypium hirsutum HOM05D000706 ORTHO05D001633 2.9e-61 240.0 325 47.7
Gorai.007G197200 Gossypium raimondii HOM05D000706 ORTHO05D001633 2.9e-61 240.0 325 47.7
Gohir.A11G177900 Gossypium hirsutum HOM05D000706 ORTHO05D001633 5.0e-61 239.2 330 47.3
Gohir.D10G090700 Gossypium hirsutum HOM05D000706 ORTHO05D001633 5.5e-60 235.7 331 46.5
Gorai.011G099700 Gossypium raimondii HOM05D000706 ORTHO05D001633 2.3e-58 230.3 331 45.9
Gohir.D11G046150 Gossypium hirsutum HOM05D000706 ORTHO05D001633 8.2e-48 195.3 310 43.5
Gorai.007G049500 Gossypium raimondii HOM05D000706 ORTHO05D001633 8.2e-48 195.3 310 43.5
QL06p033989 Quercus lobata HOM05D000706 ORTHO05D001633 1.4e-39 167.9 333 37.2
Cfa006940 Carpinus fangiana HOM05D000706 ORTHO05D001633 3.2e-36 156.8 189 51.3
Ciclev10024691m.g Citrus clementina HOM05D000706 ORTHO05D001633 2.1e-35 154.1 194 50.0
Haze_03809 Corylus avellana HOM05D000706 ORTHO05D001633 8.8e-34 148.7 221 45.2
Cpa.g.sc6.213 Carica papaya HOM05D000706 ORTHO05D001633 2.6e-33 147.1 189 50.3
Atru.chr3.765 Acer truncatum HOM05D000706 ORTHO05D001633 2.2e-32 144.1 337 35.9
Dinv40057 Davidia involucrata HOM05D000706 ORTHO05D001633 1.1e-31 141.7 226 40.3
GSVIVG01018827001 Vitis vinifera HOM05D000706 ORTHO05D001633 1.8e-31 141.0 253 40.3
CiPaw.08G135700 Carya illinoinensis HOM05D000706 ORTHO05D001633 3.1e-31 140.2 330 34.5
Prupe.7G165000 Prunus persica HOM05D000706 ORTHO05D001633 5.0e-29 132.9 337 33.5
Manes.02G101200 Manihot esculenta HOM05D000706 ORTHO05D001633 1.1e-28 131.7 188 45.2
CiPaw.08G135500 Carya illinoinensis HOM05D000706 ORTHO05D001633 1.9e-28 131.0 404 30.7
Dinv33601 Davidia involucrata HOM05D000706 ORTHO05D001633 5.5e-28 129.4 231 41.1
FvH4_1g12170 Fragaria vesca HOM05D000706 ORTHO05D001633 3.0e-26 123.6 199 41.7
FAN23G0695 Fragaria x ananassa HOM05D000706 ORTHO05D001633 3.0e-26 123.6 202 42.6
FAN26G0297 Fragaria x ananassa HOM05D000706 ORTHO05D001633 3.0e-26 123.6 199 41.7
TWI73G0969 Tripterygium wilfordii HOM05D000706 ORTHO05D001633 3.0e-26 123.6 243 40.3
FAN28G1501 Fragaria x ananassa HOM05D000706 ORTHO05D001633 8.9e-26 122.1 199 41.7
CSS0044957 Camellia sinensis var. sinensis HOM05D002906 ORTHO05D003211 3.7e-24 116.7 185 43.2
CSS0022868 Camellia sinensis var. sinensis HOM05D000706 ORTHO05D001633 4.9e-24 116.3 185 43.2
RcHm_v2.0_Chr2g0099931 Rosa chinensis HOM05D000706 ORTHO05D001633 8.3e-24 115.5 190 42.6
CANSAT01G1453 Cannabis sativa HOM05D000706 ORTHO05D001633 1.1e-23 115.2 168 45.2
MD02G1135700 Malus domestica HOM05D000706 ORTHO05D001633 1.6e-22 111.3 325 31.1
Lalb_Chr09g0321951 Lupinus albus HOM05D000706 ORTHO05D001633 4.5e-22 109.8 227 40.5
Eucgr.J02395 Eucalyptus grandis HOM05D000706 ORTHO05D001633 1.0e-21 108.6 186 41.4
Psat2g155760 Pisum sativum HOM05D000706 ORTHO05D001633 3.9e-21 106.7 227 40.5
VMungo1215G2634 Vigna mungo HOM05D000706 ORTHO05D001633 6.6e-21 105.9 140 47.1
TPR.G2360 Trifolium pratense HOM05D000706 ORTHO05D001633 1.1e-20 105.1 229 40.6
Actinidia26079 Actinidia chinensis HOM05D000706 ORTHO05D001633 1.5e-20 104.8 211 39.8
Glyma.01G169000 Glycine max HOM05D000706 ORTHO05D001633 4.7e-19 99.8 207 39.6
Glyma.01G168900 Glycine max HOM05D000706 ORTHO05D001633 6.1e-19 99.4 139 45.3
Ca_24897_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001633 8.0e-19 99.0 202 42.1
Glyma.11G074600 Glycine max HOM05D000706 ORTHO05D001633 1.8e-18 97.8 139 44.6
Gohir.A11G042650 Gossypium hirsutum HOM05D000706 ORTHO05D001633 3.1e-18 97.1 132 50.8
MD15G1249200 Malus domestica HOM05D000706 ORTHO05D001633 3.1e-18 97.1 229 32.8
Phvul.002G111600 Phaseolus vulgaris HOM05D000706 ORTHO05D001633 3.1e-18 97.1 140 45.0
Cc07_g10400 Coffea canephora HOM05D000706 ORTHO05D001633 6.8e-18 95.9 181 37.6
Potri.007G016000 Populus trichocarpa HOM05D000706 ORTHO05D001633 8.9e-18 95.5 247 33.2
Manes.01G142800 Manihot esculenta HOM05D000706 ORTHO05D001633 1.2e-17 95.1 244 34.4
Sabra07G0013200 Salix brachista HOM05D000706 ORTHO05D001633 2.6e-17 94.0 242 35.1
Medtr5g021500 Medicago truncatula HOM05D000706 ORTHO05D001633 5.8e-17 92.8 201 40.8
Nitab4.5_0000753g0060 Nicotiana tabacum HOM05D000706 ORTHO05D001633 1.7e-16 91.3 155 43.2
CSS0048501 Camellia sinensis var. sinensis HOM05D000706 ORTHO05D001633 3.7e-16 90.1 224 36.2
CSS0050455 Camellia sinensis var. sinensis HOM05D000706 ORTHO05D001633 3.7e-16 90.1 224 36.2
Sabra05G0096300 Salix brachista HOM05D000706 ORTHO05D001633 3.7e-16 90.1 247 33.2
Potri.005G117300 Populus trichocarpa HOM05D000706 ORTHO05D001633 4.9e-16 89.7 256 32.4
vmacro21905 Vaccinium macrocarpon HOM05D000706 ORTHO05D001633 4.9e-16 89.7 224 33.5
Peaxi162Scf00083g01229 Petunia axillaris HOM05D000706 ORTHO05D001633 8.3e-16 89.0 133 45.9
Lj2g0025009 Lotus japonicus HOM05D000706 ORTHO05D001633 1.4e-15 88.2 181 40.3
arahy.Tifrunner.gnm1.ann1.MV74CA Arachis hypogaea HOM05D000706 ORTHO05D001633 2.4e-15 87.4 86 61.6
arahy.Tifrunner.gnm1.ann1.HQ3BES Arachis hypogaea HOM05D000706 ORTHO05D001633 3.2e-15 87.0 139 44.6
arahy.Tifrunner.gnm1.ann1.V4KEVW Arachis hypogaea HOM05D000706 ORTHO05D001633 3.2e-15 87.0 139 44.6
Gohir.A11G042625 Gossypium hirsutum HOM05D000706 ORTHO05D001633 4.1e-15 86.7 66 69.7
TWI53G1717 Tripterygium wilfordii HOM05D000706 ORTHO05D001633 4.1e-15 86.7 121 50.4
Lj2g0017487 Lotus japonicus HOM05D000706 ORTHO05D001633 7.0e-15 85.9 235 35.3
Hund14029 Selenicereus undatus HOM05D000706 ORTHO05D001633 7.0e-15 85.9 209 34.0
arahy.Tifrunner.gnm1.ann1.MF3J08 Arachis hypogaea HOM05D000706 ORTHO05D001633 9.2e-15 85.5 114 51.8
Peaxi162Scf01385g00034 Petunia axillaris HOM05D000706 ORTHO05D001633 9.2e-15 85.5 191 37.2
Lj2A462G17 Lonicera japonica HOM05D000706 ORTHO05D001633 1.2e-14 85.1 161 39.8
Nitab4.5_0010830g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001633 1.2e-14 85.1 133 44.4
Nitab4.5_0006358g0040 Nicotiana tabacum HOM05D000706 ORTHO05D001633 6.0e-14 82.8 133 43.6
Hma1.2p1_0266F.1_g106930 Hydrangea macrophylla HOM05D000706 ORTHO05D001633 7.8e-14 82.4 222 33.8
VMungo1215G3412 Vigna mungo HOM05D000706 ORTHO05D001633 1.0e-13 82.0 148 43.2
CAN.G358.3 Capsicum annuum HOM05D000706 ORTHO05D001633 2.3e-13 80.9 126 42.9
CAN.G693.2 Capsicum annuum HOM05D000706 ORTHO05D001633 2.3e-13 80.9 162 38.9
PGSC0003DMG400003622 Solanum tuberosum HOM05D000706 ORTHO05D001633 2.3e-13 80.9 153 39.9
AUR62007650 Chenopodium quinoa HOM05D000706 ORTHO05D001633 8.6e-13 79.0 125 41.6
Nitab4.5_0005814g0020 Nicotiana tabacum HOM05D000706 ORTHO05D001633 1.5e-12 78.2 192 34.9
ClCG07G008850 Citrullus lanatus HOM05D000706 ORTHO05D001633 3.3e-12 77.0 92 47.8
Hma1.2p1_0743F.1_g211440 Hydrangea macrophylla HOM05D000706 ORTHO05D001633 3.3e-12 77.0 146 39.0
Sopen02g029200 Solanum pennellii HOM05D000706 ORTHO05D001633 3.3e-12 77.0 104 47.1
Ah.02g124660 Amaranthus hybridus HOM05D000706 ORTHO05D001633 4.3e-12 76.6 134 40.3
Nitab4.5_0016410g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001633 4.3e-12 76.6 213 33.8
Phvul.002G111700 Phaseolus vulgaris HOM05D000706 ORTHO05D001633 4.3e-12 76.6 208 36.5
Sp3g31520 Schrenkiella parvula HOM05D000706 ORTHO05D001633 4.3e-12 76.6 177 38.4
EL10As8g23852 Beta vulgaris HOM05D000706 ORTHO05D001633 1.2e-11 75.1 80 50.0
BcaC04g22931 Brassica carinata HOM05D000706 ORTHO05D001633 1.2e-11 75.1 139 41.7
TAR625G0367 Trochodendron aralioides HOM05D000706 ORTHO05D001633 1.2e-11 75.1 159 38.4
CsaV3_4G005330 Cucumis sativus L. HOM05D000706 ORTHO05D001633 1.6e-11 74.7 80 51.2
Nitab4.5_0000136g0060 Nicotiana tabacum HOM05D000706 ORTHO05D001633 1.6e-11 74.7 133 40.6
Lalb_Chr16g0377621 Lupinus albus HOM05D000706 ORTHO05D001633 2.1e-11 74.3 107 45.8
Peaxi162Scf00010g00517 Petunia axillaris HOM05D000706 ORTHO05D001633 2.1e-11 74.3 178 37.1
Thhalv10022555m.g Eutrema salsugineum HOM05D000706 ORTHO05D001633 2.8e-11 73.9 150 40.0
BcaB03g16593 Brassica carinata HOM05D000706 ORTHO05D001633 1.1e-10 72.0 143 42.0
Solyc02g084520.3 Solanum lycopersicum HOM05D000706 ORTHO05D001633 1.4e-10 71.6 104 45.2
TAR381G1479 Trochodendron aralioides HOM05D000706 ORTHO05D001633 1.4e-10 71.6 194 34.0
MSTRG.23284 Avicennia marina HOM05D000706 ORTHO05D001633 1.8e-10 71.2 207 34.3
Ca_24896_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001633 2.3e-10 70.9 206 33.0
THA.LOC104807483 Tarenaya hassleriana HOM05D000706 ORTHO05D001633 2.3e-10 70.9 152 40.8
AL3G51260 Arabidopsis lyrata HOM05D000706 ORTHO05D001633 4.0e-10 70.1 178 38.8
CAN.G785.8 Capsicum annuum HOM05D000706 ORTHO05D001633 4.0e-10 70.1 194 35.1
Lalb_Chr09g0321961 Lupinus albus HOM05D000706 ORTHO05D001633 4.0e-10 70.1 190 35.8
SalBow8G2798 Salvia bowleyana HOM05D000706 ORTHO05D001633 4.0e-10 70.1 228 31.6
PGSC0003DMG402012010 Solanum tuberosum HOM05D000706 ORTHO05D001633 5.2e-10 69.7 125 41.6
Actinidia31015 Actinidia chinensis HOM05D000706 ORTHO05D001633 1.2e-09 68.6 239 32.2
Ah.03g141560 Amaranthus hybridus HOM05D000706 ORTHO05D001633 1.2e-09 68.6 80 48.8
AT2G18090 Arabidopsis thaliana HOM05D000706 ORTHO05D001633 1.2e-09 68.6 151 41.1
CARHR108570 Cardamine hirsuta HOM05D000706 ORTHO05D001633 1.2e-09 68.6 176 38.1
PGR102G2187 Punica granatum HOM05D000706 ORTHO05D001633 2.0e-09 67.8 215 33.5
SalBow8G0912 Salvia bowleyana HOM05D000706 ORTHO05D001633 2.0e-09 67.8 222 29.3
Oeu063193.2 Olea europaea HOM05D001544 ORTHO05D002732 2.6e-09 67.4 177 37.9
Sed0026228 Sechium edule HOM05D000706 ORTHO05D001633 2.6e-09 67.4 85 48.2
Sc16g0002380 Simmondsia chinensis HOM05D000706 ORTHO05D001633 3.4e-09 67.0 173 33.5
Solyc02g062370.4 Solanum lycopersicum HOM05D000706 ORTHO05D001633 7.5e-09 65.9 125 39.2
Sopen02g013370 Solanum pennellii HOM05D000706 ORTHO05D001633 9.8e-09 65.5 125 39.2
Solyc03g033630.3 Solanum lycopersicum HOM05D000706 ORTHO05D001633 1.3e-08 65.1 194 35.1
Sopen03g006420 Solanum pennellii HOM05D000706 ORTHO05D001633 1.3e-08 65.1 194 35.1
PGSC0003DMG400022537 Solanum tuberosum HOM05D000706 ORTHO05D001633 1.3e-08 65.1 194 35.1
Carub.0003s3222 Capsella rubella HOM05D000706 ORTHO05D001633 1.7e-08 64.7 175 36.0
Hund16475 Selenicereus undatus HOM05D000706 ORTHO05D001633 1.7e-08 64.7 133 36.1
Sed0017742 Sechium edule HOM05D000706 ORTHO05D001633 8.3e-08 62.4 89 48.3
A09p11710 Brassica napus HOM05D002906 ORTHO05D003211 1.4e-07 61.6 171 36.3
C09p13780 Brassica napus HOM05D002906 ORTHO05D003211 3.2e-07 60.5 190 33.2
BolC9t54266H Brassica oleracea HOM05D002906 ORTHO05D003211 3.2e-07 60.5 192 32.8
Oeu012301.1 Olea europaea HOM05D000706 ORTHO05D001633 3.2e-07 60.5 162 32.1
TPR.G2331 Trifolium pratense HOM05D000706 ORTHO05D001633 3.2e-07 60.5 181 30.9
BraA09t36816Z Brassica rapa HOM05D002906 ORTHO05D003211 4.1e-07 60.1 171 35.7
Glyma.11G074400 Glycine max HOM05D000706 ORTHO05D001633 5.4e-07 59.7 208 32.7
Sc03g0003430 Simmondsia chinensis HOM05D000706 ORTHO05D001633 5.4e-07 59.7 132 37.9
Aa31LG8G15250 Aethionema arabicum HOM05D000706 ORTHO05D001633 9.2e-07 58.9 159 34.0
BcaB07g31686 Brassica carinata HOM05D000706 ORTHO05D001633 1.2e-06 58.5 139 38.8
BcaB08g34790 Brassica carinata HOM05D000706 ORTHO05D001633 2.7e-06 57.4 168 35.1


User provided reference genes

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