Gene: CiPaw.08G135700
General Information
Structural Information
- Species Carya illinoinensis
- Gene Identifier CiPaw.08G135700
- Transcript Identifier CiPaw.08G135700.1
- Gene Type Coding gene
- Location Chr08 : 28428951-28438046 : positive
Gene Family Information
- ID HOM05D000706
- #Genes/#Species 813/97
- Phylogenetic origin
- ID ORTHO05D001633
- #Genes/#Species 378/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id CiPaw.08G135700.v1.1
- pacid 45841600
- locus Caril.08G134400
Descriptions
- Description PF00642//PF02201//PF02213//PF03126 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // SWIB/MDM2 domain (SWIB) // GYF domain (GYF) // Plus-3 domain (Plus-3)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0005515 | IEA | InterPro | protein binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR004343 | Plus-3 domain |
| IPR003121 | SWIB/MDM2 domain |
| IPR036855 | Zinc finger, CCCH-type superfamily |
| IPR019835 | SWIB domain |
| IPR003169 | GYF domain |
| IPR036885 | SWIB/MDM2 domain superfamily |
| IPR036128 | Plus3-like superfamily |
| IPR000571 | Zinc finger, CCCH-type |
| IPR035445 | GYF-like domain superfamily |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR001965 | Zinc finger, PHD-type |
| Mapman id | Description |
|---|---|
| 12.5.1.15.1 | Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway.protein factor (NERD) |