Gene: Sopen02g029200

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g029200
  • Transcript Identifier Sopen02g029200.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 51576918-51586802 : positive

Gene Family Information

  • ID HOM05D000706
  • #Genes/#Species 813/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g029200.1

Descriptions

  • Description DNA binding, zinc ion binding, nucleic acid binding, nucleic acid binding | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: histone modification, transcription initiation | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , Plus-3 domain, subgroup , Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , GYF , SWIB/MDM2 domain , Plus-3 , SWIB domain , Zinc finger, FYVE/PHD-type , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: nucleic acid binding, zinc ion binding, DNA binding
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003677
IEA
InterProDNA binding
GO:0046872
IEA
InterPrometal ion binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035445 GYF-like domain superfamily
IPR003121 SWIB/MDM2 domain
IPR003169 GYF domain
IPR004343 Plus-3 domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR019835 SWIB domain
IPR011011 Zinc finger, FYVE/PHD-type
IPR036128 Plus3-like superfamily
IPR036855 Zinc finger, CCCH-type superfamily
IPR001965 Zinc finger, PHD-type
IPR036885 SWIB/MDM2 domain superfamily
Mapman id Description
12.5.1.15.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway.protein factor (NERD)