Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.3e-128 463.0 229 100.0
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.9e-111 406.0 229 86.5
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 5.6e-111 404.4 229 86.9
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.8e-109 399.4 229 85.2
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.3e-107 393.3 229 84.3
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.2e-107 392.5 229 84.3
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 8.4e-107 390.6 229 84.3
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 2.5e-90 335.9 232 74.6
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 1.6e-89 333.2 232 74.6
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 4.6e-89 331.6 232 71.6
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 8.8e-88 327.4 231 73.2
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 2.5e-87 325.9 231 71.0
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 4.3e-87 325.1 233 72.1
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.2e-86 322.8 229 73.4
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 2.8e-86 322.4 231 72.7
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 4.8e-86 321.6 234 69.7
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 4.8e-86 321.6 239 71.1
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 6.3e-86 321.2 230 70.4
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 8.2e-86 320.9 231 71.4
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 1.1e-85 320.5 237 69.2
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 2.4e-85 319.3 234 69.7
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.1e-85 318.5 231 71.4
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 5.3e-85 318.2 232 72.8
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.9e-85 317.8 229 70.7
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.2e-84 317.0 232 71.1
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.0e-84 316.2 231 71.4
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.0e-83 313.9 231 71.0
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 3.8e-83 312.0 231 68.8
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 6.5e-83 311.2 231 69.7
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.4e-82 310.1 229 68.6
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.2e-82 308.9 229 69.4
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 9.4e-82 307.4 232 68.1
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 9.4e-82 307.4 232 68.1
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 2.7e-81 305.8 230 70.4
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 4.7e-81 305.1 230 70.4
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.4e-80 303.5 229 67.7
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 1.4e-80 303.5 229 69.0
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.8e-80 303.1 238 66.4
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 2.3e-80 302.8 238 66.0
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 8.8e-80 300.8 231 68.4
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 4.4e-79 298.5 229 66.8
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 5.7e-79 298.1 229 64.2
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 5.7e-79 298.1 230 66.5
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 7.4e-79 297.7 231 68.0
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.3e-78 297.0 231 65.8
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.7e-78 296.6 231 67.5
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.7e-78 296.6 234 66.7
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 2.2e-78 296.2 231 64.9
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 2.2e-78 296.2 229 66.8
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 6.3e-78 294.7 229 67.2
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.4e-77 293.5 205 72.2
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 2.4e-77 292.7 232 66.8
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 4.1e-77 292.0 229 63.8
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.2e-76 290.4 235 63.4
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 3.5e-76 288.9 242 62.4
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 3.5e-76 288.9 204 71.1
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 5.9e-76 288.1 238 63.0
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 1.3e-75 287.0 229 66.4
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 1.7e-75 286.6 240 64.6
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 5.0e-75 285.0 238 62.6
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 8.5e-75 284.3 238 63.9
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.1e-74 283.9 238 61.8
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 2.5e-74 282.7 230 63.5
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 1.2e-73 280.4 230 61.7
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 1.6e-73 280.0 238 61.3
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 1.6e-73 280.0 223 64.6
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 4.7e-73 278.5 238 60.9
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.0e-72 277.3 233 63.9
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.8e-72 276.6 275 56.0
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 2.3e-72 276.2 238 60.5
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.3e-72 276.2 233 63.1
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 3.9e-72 275.4 235 60.9
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 5.2e-72 275.0 233 62.2
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.2e-72 275.0 237 61.6
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 6.7e-72 274.6 231 61.9
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 2.6e-71 272.7 230 60.9
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 7.4e-71 271.2 267 57.3
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 1.3e-70 270.4 205 65.9
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 8.2e-70 267.7 210 64.3
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.1e-69 267.3 233 60.1
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 2.4e-69 266.2 235 60.9
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 2.0e-68 263.1 209 62.7
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.0e-68 263.1 231 64.1
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 2.2e-67 259.6 224 62.5
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.8e-64 250.0 205 60.5
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 4.0e-64 248.8 208 60.6
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.6e-63 246.1 214 62.1
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 2.2e-62 243.0 185 65.4
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 6.3e-62 241.5 221 57.9
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 8.3e-62 241.1 189 64.6
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 8.3e-62 241.1 231 57.1
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 5.3e-61 238.4 174 67.2
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 9.1e-61 237.7 233 56.7
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 1.6e-60 236.9 223 57.4
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.6e-60 236.9 263 51.3
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 5.0e-59 231.9 235 55.7
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 5.0e-59 231.9 228 57.9
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.5e-58 230.3 235 55.3
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 1.5e-55 220.3 122 84.4
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 7.5e-55 218.0 204 57.4
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 3.7e-54 215.7 179 67.0
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 6.3e-54 214.9 223 55.6
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.4e-53 213.8 229 51.1
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 7.0e-53 211.5 208 55.8
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.3e-51 206.5 179 65.9
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 1.1e-50 204.1 207 54.6
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 1.8e-48 196.8 169 58.6
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 9.8e-47 191.0 258 46.9
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 2.2e-46 189.9 262 43.1
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 3.7e-46 189.1 231 46.3
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 8.3e-46 188.0 96 85.4
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.1e-45 187.6 177 58.8
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.4e-45 187.2 191 57.6
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 7.0e-45 184.9 185 55.1
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 1.2e-44 184.1 252 44.4
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.3e-43 180.6 197 51.8
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 1.7e-43 180.3 174 59.2
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 1.5e-31 140.6 101 71.3
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 1.4e-29 134.0 176 46.0
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 8.6e-27 124.8 70 85.7
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.5e-26 121.3 90 72.2
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 4.7e-25 119.0 57 91.2
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 8.1e-25 118.2 72 84.7
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 3.4e-23 112.8 133 48.1
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.1e-19 99.0 74 73.0
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 8.6e-19 98.2 67 61.2
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 2.1e-17 93.6 49 81.6
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 6.8e-16 88.6 50 70.0
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 6.8e-16 88.6 95 49.5
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 7.6e-15 85.1 106 48.1
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 9.9e-15 84.7 52 78.8
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.7e-14 84.0 58 74.1
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.9e-14 82.4 48 83.3
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.4e-14 82.0 48 83.3
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.4e-13 80.9 48 81.2
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.4e-13 80.9 48 79.2
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.6e-12 77.4 70 57.1
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.0e-11 73.2 56 67.9
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 4.0e-08 62.8 42 69.0
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 5.3e-08 62.4 29 89.7


User provided reference genes

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